Browse Element(s) Details


Os.49552.1.S1_at

Description gb:AK103397.1
DB_XREF= gi:32988606
TID=Os.49552.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127N09, full insert sequence.
FL= gb:AK103397.1 gb:AK101798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3690011/11WD-40 repeat protein MSI1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed
LOC_Os09g36920OsAffx.18018.1.S1_s_at11/119+21299441..21303732La domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0007275biological_processdevelopment
GO:0016568biological_processchromatin modification
GO:0005634cellular_componentnucleus
GO:0016585cellular_componentchromatin remodeling complex
GO:0000166molecular_functionnucleotide binding
GO:0005053molecular_functionperoxisome targeting signal-2 binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49552.1.S1_at--923--5411Chr09:21278342..21278366 (25 bp)
GAAGCCTGCATGTATTCGACAGCCA
LOC_Os09g36900
Os.49552.1.S1_at--670--5991Chr09:21279048..21279072 (25 bp)
GAGACTGTGTTAGCATCCTCAGCTG
LOC_Os09g36900
Os.49552.1.S1_at--1125--651Chr09:21279693..21279717 (25 bp)
ATGCAAACGATGGTCCACCGGAGCT
LOC_Os09g36900
Os.49552.1.S1_at--1148--1591Chr09:21279714..21279738 (25 bp)
AGCTGCTGTTCGTGCATGGAGGCCA
LOC_Os09g36900
Os.49552.1.S1_at--224--8451Chr09:21279734..21279758 (25 bp)
GGCCACACAGCCAAGATATCAGAGT
LOC_Os09g36900
Os.49552.1.S1_at--222--10111Chr09:21279750..21279774 (25 bp)
TATCAGAGTTGTCGTGGAACCCCAC
LOC_Os09g36900
Os.49552.1.S1_at--1081--4391Chr09:21279791..21279815 (25 bp)
GCCAGCGTGGCCGAGGATAACATCC
LOC_Os09g36900
Os.49552.1.S1_at--1111--6831Chr09:21279926..21279950 (25 bp)
GTTTCTGTTGCGTCTTTGGATAGCT
LOC_Os09g36900
Os.49552.1.S1_at--101--6631Chr09:21280005..21280029 (25 bp)
GTTGTTTAATCAGCTTTCGTTTTCG
LOC_Os09g36900
Os.49552.1.S1_at--923--10611Chr09:21280020..21280044 (25 bp)
TTCGTTTTCGTTTGACACCTCCAAT
LOC_Os09g36900
Os.49552.1.S1_at--285--10211Chr09:21280080..21280104 (25 bp)
TATTTACTACTGTATGCCTTGCCTT
LOC_Os09g36900
Target Sequence 
GAAGCCTGCATGTATTCGACAGCCATGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACT
GTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGAGCAGGCAGAGGAGGA
TGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCA
CCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGAT
GACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAAGGACCTGGCCAACTTCCCTATTCTGTTTCTGT
TGCGTCTTTGGATAGCTTGGTTGGATTGATCATATATTCAGTTAGTAACCTCTAGTAGGCTTTGAGATGCTGTTGTTTAA
TCAGCTTTCGTTTTCGTTTGACACCTCCAATCCAAGGATGGAACATCTTGATGTAGAATGTCCAACTATTTACTACTGTA
TGCCTTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis