Browse Element(s) Details


OsAffx.6498.1.S1_at

Description tigr:9637.m03114
TID=OsAffx.6498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3687011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6498.1.S1_at--442--4051Chr09:21266378..21266402 (25 bp)
CGATCCCGTGCGTGACGGAGCTGCA
LOC_Os09g36870
OsAffx.6498.1.S1_at--512--6171Chr09:21266245..21266269 (25 bp)
GAGGATCCTCCTGGCGAACCTGCTG
LOC_Os09g36870
OsAffx.6498.1.S1_at--484--7611Chr09:21266189..21266213 (25 bp)
GGGAAGGCATCGTGACCAGCTACCT
LOC_Os09g36870
OsAffx.6498.1.S1_at--277--511Chr09:21266181..21266205 (25 bp)
ATCGTGACCAGCTACCTGGTGCTGA
LOC_Os09g36870
OsAffx.6498.1.S1_at--636--3931Chr09:21266107..21266131 (25 bp)
CGGCGTCCTGGACAACATGCTGTCG
LOC_Os09g36870
OsAffx.6498.1.S1_at--539--10551Chr09:21266061..21266085 (25 bp)
TTCTTCAACCGGTTCGGCGGGTGCG
LOC_Os09g36870
OsAffx.6498.1.S1_at--532--2591Chr09:21265986..21266010 (25 bp)
AACGAGTACCGCAACCACCGCTGGA
LOC_Os09g36870
OsAffx.6498.1.S1_at--1016--2611Chr09:21265974..21265998 (25 bp)
AACCACCGCTGGAACCGGTACATCG
LOC_Os09g36870
OsAffx.6498.1.S1_at--829--5431Chr09:21265963..21265987 (25 bp)
GAACCGGTACATCGCCGTGCTGAAG
LOC_Os09g36870
OsAffx.6498.1.S1_at--169--1751Chr09:21265887..21265911 (25 bp)
ACCTTGCTGTGCATCTCGGTCATGT
LOC_Os09g36870
OsAffx.6498.1.S1_at--566--8691Chr09:21265880..21265904 (25 bp)
TGTGCATCTCGGTCATGTCCGCCGG
LOC_Os09g36870
Target Sequence 
CGATCCCGTGCGTGACGGAGCTGCAGGAGTTCGGGGTGGCGTTCCGGGAGAAGGCGTCGCCGGTGAGCCAGTTCGACGTG
ACGTTCCGCGGCGGGACGATGGAGATCCCGCGGCTGGCGCTGAGCTCCGGCGCGAGGATCCTCCTGGCGAACCTGCTGGC
GCTGGAGCAGACGACGGGGGACTGGGAGGGGGAAGGCATCGTGACCAGCTACCTGGTGCTGATGAACGCGCTGGTGAACA
CGGGCGCCGACGTCGCGGTGCTCCAGCGGCGCGGCGTCCTGGACAACATGCTGTCGAACGAGGAGGCCGCGGCGGCGTTC
TTCAACCGGTTCGGCGGGTGCGCGCTGTTCGACCCGAGGGGGCACCACTACGCGCGGCTCTTCGCCGACGCCAACGAGTA
CCGCAACCACCGCTGGAACCGGTACATCGCCGTGCTGAAGCGCGACCACCTCCGGACGCCATGCTCCATCATCTCCCTGC
TCGCCGCGGCCACCTTGCTGTGCATCTCGGTCATGTCCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis