Browse Element(s) Details


Os.14530.2.S1_x_at

Description gb:AK112006.1
DB_XREF= gi:37988669
TID=Os.14530.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B09, full insert sequence.
FL= gb:AK112006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3688011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14530.2.S1_x_at--907--4731Chr09:21270779..21270803 (25 bp)
GCTGTTCAACGCCAAGCTGGAGCAG
LOC_Os09g36880
Os.14530.2.S1_x_at--91--1611Chr09:21270726..21270750 (25 bp)
AGCTGCAGAGCATCGGCTACGTCGA
LOC_Os09g36880
Os.14530.2.S1_x_at--126--1911Chr09:21270708..21270732 (25 bp)
ACGTCGACATCTACGGCGTCCTGGA
LOC_Os09g36880
Os.14530.2.S1_x_at--986--4471Chr09:21270550..21270697 (25 bp)
GCCGACCCCGGCAAATACGGATTTG
LOC_Os09g36880
Os.14530.2.S1_x_at--484--1231Chr09:21270492..21270516 (25 bp)
AGTTCGAGGTGACGCTTCTCTGCAA
LOC_Os09g36880
Os.14530.2.S1_x_at--61--1871Chr09:21270454..21270478 (25 bp)
ACGACGTGCGCCGATGACCGGAAGT
LOC_Os09g36880
Os.14530.2.S1_x_at--413--5831Chr09:21270439..21270463 (25 bp)
GACCGGAAGTTTGTCTTCTGGGACA
LOC_Os09g36880
Os.14530.2.S1_x_at--251--5651Chr09:21270418..21270442 (25 bp)
GACAGCTTCCATCCTACTGAGAGAG
LOC_Os09g36880
Os.14530.2.S1_x_at--217--10131Chr09:21270255..21270279 (25 bp)
TATGCAACCTTAGCACAGTTCCAGC
LOC_Os09g36880
Os.14530.2.S1_x_at--834--5111Chr09:21270243..21270267 (25 bp)
GCACAGTTCCAGCACAATGTCACAT
LOC_Os09g36880
Os.14530.2.S1_x_at--273--6271Chr09:21270203..21270227 (25 bp)
GATGTGAGACCCTTTTGTTCTGATA
LOC_Os09g36880
Target Sequence 
GCTGTTCAACGCCAAGCTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACA
TCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACC
GGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGA
CAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAG
GTTTTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAA
TTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14530.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis