Browse Element(s) Details


Os.14530.1.S1_at

Description gb:AK111927.1
DB_XREF= gi:37988590
TID=Os.14530.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C10, full insert sequence.
FL= gb:AK111927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3688011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14530.1.S1_at--826--4191Chr09:21270668..21270692 (25 bp)
CCCCGGCAAATACGGTGACCCAGAT
LOC_Os09g36880
Os.14530.1.S1_at--827--3091Chr09:21270660..21270684 (25 bp)
AATACGGTGACCCAGATTCGATCGA
LOC_Os09g36880
Os.14530.1.S1_at--765--3971Chr09:21270656..21270680 (25 bp)
CGGTGACCCAGATTCGATCGATTCG
LOC_Os09g36880
Os.14530.1.S1_at--463--4051Chr09:21270642..21270666 (25 bp)
CGATCGATTCGTTGTTTTGCTTCAA
LOC_Os09g36880
Os.14530.1.S1_at--145--3231Chr09:21270620..21270644 (25 bp)
CAAGAACACATTGTCGAATTCATCG
LOC_Os09g36880
Os.14530.1.S1_at--664--5211Chr09:21270605..21270629 (25 bp)
GAATTCATCGATTCGTTAGCTCTCG
LOC_Os09g36880
Os.14530.1.S1_at--8--511Chr09:21270599..21270623 (25 bp)
ATCGATTCGTTAGCTCTCGATCGAT
LOC_Os09g36880
Os.14530.1.S1_at--963--4471Chr09:21270569..21270593 (25 bp)
GCCTGAGAAGATGCTCGTTGTTGCT
LOC_Os09g36880
Os.14530.1.S1_at--356--5971Chr09:21270565..21270589 (25 bp)
GAGAAGATGCTCGTTGTTGCTGCTG
LOC_Os09g36880
Os.14530.1.S1_at--343--10711Chr09:21270549..21270573 (25 bp)
TTGCTGCTGCCTGTGCAGGATTTGA
LOC_Os09g36880
Os.14530.1.S1_at--982--9171Chr09:21270542..21270566 (25 bp)
TGCCTGTGCAGGATTTGATGTGTCG
LOC_Os09g36880
Target Sequence 
CCCCGGCAAATACGGTGACCCAGATTCGATCGATTCGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTT
AGCTCTCGATCGATCGATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis