Browse Element(s) Details


Os.14289.1.S1_at

Description gb:AK107139.1
DB_XREF= gi:32992348
TID=Os.14289.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D01, full insert sequence.
FL= gb:AK107139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4575011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45730Os.48817.1.A1_at10/114+26839293..26841021Protein kinase domain containing protein, expressed
LOC_Os04g45740OsAffx.26475.1.S1_at11/114+26847599..26848832hypothetical protein
LOC_Os04g45750Os.14289.1.S1_at11/114+26858283..26861210expressed protein
LOC_Os04g45750OsAffx.2477.1.S1_x_at1/114+26858283..26861210expressed protein
LOC_Os04g45760NANA4+26865957..26867459retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45770NANA4+26868800..26871760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45780OsAffx.14870.2.S1_at11/114+26873740..26877595hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14289.1.S1_at--479--1491Chr04:26858845..26858869 (25 bp)
AGCAACCACTCTCCTTCGAGTTGGG
LOC_Os04g45750
Os.14289.1.S1_at--317--1254Chr06:7112725..7112750 (25 bp)
AGTTGGGATCTCTCCTGTAATGCAT
NONE
Os.14289.1.S1_at--371--652Chr04:26858808..26858832 (25 bp)
ATGCATGTGCGGTAAGTGCCAATGA
LOC_Os04g45750
Os.14289.1.S1_at--237--8398Chr12:6750771..6750973 (25 bp)
GGCCCGGAATAGGTGGGACCCACAT
NONE
Os.14289.1.S1_at--564--592Chr10:18669141..18669177 (25 bp)
ATGCCAGTGACACCAGTACAGCAGT
NONE
Os.14289.1.S1_at--672--9856Chr10:18669169..18669190 (22 bp)
TACAGCAGTGGATTTGCATCCCTCT
NONE
Os.14289.1.S1_at--243--111Chr04:26858700..26858724 (25 bp)
ATTCTCCCGTGCCATTCCATTATTT
LOC_Os04g45750
Os.14289.1.S1_at--793--671Chr04:26858600..26858624 (25 bp)
ATGAGTCCGGGTAACTTTATCTCTA
LOC_Os04g45750
Os.14289.1.S1_at--325--2051Chr04:26858587..26858611 (25 bp)
ACTTTATCTCTATAGGTCACCTCGT
LOC_Os04g45750
Os.14289.1.S1_at--1037--7011Chr04:26858544..26858568 (25 bp)
GTACATCGATGTAACAGTCCCTGAT
LOC_Os04g45750
Os.14289.1.S1_at--122--3931Chr04:26858476..26858500 (25 bp)
CGGCGACGGCGGTATACAAGTTTGT
LOC_Os04g45750
Target Sequence 
AGCAACCACTCTCCTTCGAGTTGGGATCTCTCCTGTAATGCATGTGCGGTAAGTGCCAATGACATGTGGGCCCGGAATAG
GTGGGACCCACATGCCAGTGACACCAGTACAGCAGTGGATTTGCATCCCTCTCCTTCACCTTGTAATTCTCCCGTGCCAT
TCCATTATTTATTGATTTCTCTGTGTAATAAGAGCCCTCCNTGATCTCACNTNAACCCGAGGAAGCAGAGGGGGTGGTAG
AGAAAATGAGTCCGGGTAACTTTATCTCTATAGGTCACCTCGTCGTGGTAAAGGAAGAATTGTACATCGATGTAACAGTC
CCTGATGTCTCTGTTTTTTTTNNCTCTCTCTCTTTTTCTCCTTCCCCTCCGGCGACGGCGGTATACAAGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis