Browse Element(s) Details


Os.14324.1.S1_at

Description gb:BI805730
DB_XREF= gi:15852934
DB_XREF=S043H11
CLONE=S043H11
TID=Os.14324.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14324 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g328002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32770NANA4+19578629..19584481retrotransposon protein, putative, unclassified
LOC_Os04g32780OsAffx.26292.1.S1_at11/114+19585827..19586553hypothetical protein
LOC_Os04g32790OsAffx.14100.1.S1_at11/114+19603029..19603907AP2 domain containing protein
LOC_Os04g32800Os.14324.1.S1_s_at11/114+19608876..19611004expressed protein
LOC_Os04g32800Os.14324.1.S1_at2/114+19608876..19611004expressed protein
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14324.1.S1_at--647--3491NONE
CATGGCGCGGCTGCTATAAACCTGC
NONE
Os.14324.1.S1_at--591--871NONE
ATGGCGCGGCTGCTATAAACCTGCA
NONE
Os.14324.1.S1_at--675--8471NONE
TGGCGCGGCTGCTATAAACCTGCAG
NONE
Os.14324.1.S1_at--1044--8391NONE
GGCGCGGCTGCTATAAACCTGCAGT
NONE
Os.14324.1.S1_at--359--8331NONE
GGCTGCTATAAACCTGCAGTCTCGC
NONE
Os.14324.1.S1_at--379--9071NONE
TGCTATAAACCTGCAGTCTCGCCGT
NONE
Os.14324.1.S1_at--284--7471Chr04:19609233..19609254 (22 bp)
GTGTGCGTCATCATGTGACCAATTA
LOC_Os04g32800
Os.14324.1.S1_at--51--7311Chr04:19609211..19609252 (25 bp)
GTGCGTCATCATGTGACCAATTAAT
LOC_Os04g32800
Os.14324.1.S1_at--1100--211Chr05:11289452..11289471 (20 bp)
ATATACCTATATATAGTTCAAACAG
NONE
Os.14324.1.S1_at--228--6751NONE
GTTCAAACAGAACGATTTCCCATAT
NONE
Os.14324.1.S1_at--91--3291NONE
CAAACAGAACGATTTCCCATATGGT
NONE
Target Sequence 
CATGGCGCGGCTGCTATAAACCTGCAGTCTCGCCGTNCGGCGGCGGGTGTTCGATCAGCGACGCGGCGCCTGTGGCGCCA
GCTGCAAGCCGCCCCGCCGCCGCGGCGATCTGGCCGCCGCAGCCTAGCTTCTACTACTACCCGCCGCCGCCGTGTGGGGG
CTACAAGTTCGCCTGCGAGGAGAACTCCGACGTGTGCGTCATCATGTGACCAATTAATTAAGCTGTTGCTTAATTTGACG
TCGACGGTGCTTCGTTCTTTGCCTCGGAAGTCGGGATAATGACGTCATCTGTGTATATACGTAGTACGTACGTATTGCTG
TACCTGTAATTGTTGTTATGTATGTAAAATTCAGTACTAGTCCCTGCTATATACGTTCTAAAAAAAAGTCCCTACTATAC
ATATATATATACCTATATATAGTTCAAACAGAACGATTTCCCATATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis