Browse Element(s) Details


Os.1433.3.S1_x_at

Description gb:AK106681.1
DB_XREF= gi:32991890
TID=Os.1433.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013G02.21 (P0013G02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B06, full insert sequence.
FL= gb:AK106681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4033011/11expressed protein
LOC_Os02g403405/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40280OsAffx.12427.1.S1_at11/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.2925.1.S1_at10/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.10566.1.S1_at1/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40300NANA2+24391662..24392900retrotransposon protein, putative, unclassified
LOC_Os02g40310Os.49896.1.S1_at1/112+24394454..24397332retrotransposon protein, putative, unclassified, expressed
LOC_Os02g40320OsAffx.12428.1.S1_at10/112+24397660..24403443PAZ domain containing protein, expressed
LOC_Os02g40330Os.1433.3.S1_x_at11/112+24403448..24408215expressed protein
LOC_Os02g40330Os.1433.2.S1_at11/112+24403448..24408215expressed protein
LOC_Os02g40340Os.1433.1.S1_at11/112+24421162..24429328expressed protein
LOC_Os02g40340Os.1433.3.S1_x_at5/112+24421162..24429328expressed protein
LOC_Os02g40350Os.20602.2.S1_x_at9/112+24430070..24432250hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1433.3.S1_x_at--191--4331Chr02:24405054..24405078 (25 bp)
CCATCGTACGCAACGAAGCCGATTG
LOC_Os02g40330
Os.1433.3.S1_x_at--176--2671Chr02:24405039..24405063 (25 bp)
AAGCCGATTGCCTAGAGGCGGTCTC
LOC_Os02g40330
Os.1433.3.S1_x_at--654--5251Chr02:24404793..24404817 (25 bp)
GAATCTCATCCTTTGCGGGCTGCTA
LOC_Os02g40330
Os.1433.3.S1_x_at--587--8331Chr02:24404776..24404800 (25 bp)
GGCTGCTACTGCTTCGCGCGTCAAG
LOC_Os02g40330
Os.1433.3.S1_x_at--172--5512Chr02:24429009..24429033 (25 bp)
GAACAACAATATTCTCTCCGACTGC
LOC_Os02g40340
Os.1433.3.S1_x_at--320--552Chr02:24428951..24428975 (25 bp)
ATCCCGGTACGCACACGCTTGAGAG
LOC_Os02g40340
Os.1433.3.S1_x_at--681--10772Chr02:24428933..24428957 (25 bp)
TTGAGAGGCTCCCACTTTCTTCATT
LOC_Os02g40340
Os.1433.3.S1_x_at--696--10292Chr02:24428918..24428942 (25 bp)
TTTCTTCATTCTGCTACTGTACGGT
LOC_Os02g40340
Os.1433.3.S1_x_at--762--6992Chr02:24428900..24428924 (25 bp)
GTACGGTTGGATTCGTGCATAACAA
LOC_Os02g40340
Os.1433.3.S1_x_at--1090--3311Chr02:24404588..24404612 (25 bp)
CACTCATATCTCTATGTCTAGCCTG
LOC_Os02g40330
Os.1433.3.S1_x_at--491--7151Chr02:24404573..24404597 (25 bp)
GTCTAGCCTGCCCATGATTATTTAT
LOC_Os02g40330
Target Sequence 
CCATCGTACGCAACGAAGCCGATTGCCTAGAGGCGGTCTCGCCGCGCCGCTTCCCGTGGAGCCCAAGTGGTGGCGAGGGT
TTCCGCCGCCTCTCGTCCGCCTCGCCGACCTCGGACCCCGGCCTCCATCCTCCTCGCCGACGACAGCCAACGTGTGCCGC
TCCCCTTGGAGCCCAAGTGGCGGCGAGGGTTTCCGCCGCCTCTGCTCCGCTCGCCGGCGACAGCCCCATGTTCTCGATCG
CCGTCCCCAGGTCCGCTTCCGGAATCTCATCCTTTGCGGGCTGCTACTGCTTCGCGCGTCAAGCCATCACCAGCTGCTCC
CTCCGTCTCCGGAACAACAATATTCTCTCCGACTGCTCACGACGGGAGAGCGGCGCTTCGGCGACGGCGATCCCGGTACG
CACACGCTTGAGAGGCTCCCACTTTCTTCATTCTGCTACTGTACGGTTGGATTCGTGCATAACAATCACTCATATCTCTA
TGTCTAGCCTGCCCATGATTATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1433.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis