Browse Element(s) Details


Os.14331.1.S1_at

Description gb:AK106685.1
DB_XREF= gi:32991894
TID=Os.14331.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C01, full insert sequence.
FL= gb:AK106685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3322011/11BNR/Asp-box repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33200Os.49620.1.S1_at11/117+19825595..19831501expressed protein
LOC_Os07g33210Os.56983.1.S1_at1/117+19836882..19840894expressed protein
LOC_Os07g33220Os.14331.1.S1_at11/117+19849290..19852778BNR/Asp-box repeat family protein, putative, expressed
LOC_Os07g33230OsAffx.5512.1.S1_at11/117+19857532..19859359Protein phosphatase 2C containing protein
LOC_Os07g33240Os.13599.1.S1_at11/117+19859915..19862826expressed protein
LOC_Os07g33250NANA7+19867227..19870498retrotransposon protein, putative, unclassified
LOC_Os07g33260NANA7+19871140..19877295transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14331.1.S1_at--106--6651Chr07:19852481..19852505 (25 bp)
GTTGTTCTTCAACCTAGCGGGAAAG
LOC_Os07g33220
Os.14331.1.S1_at--1082--7631Chr07:19852530..19852554 (25 bp)
GGGAGAGTTATTGCTGCCAATTGCA
LOC_Os07g33220
Os.14331.1.S1_at--1137--5171Chr07:19852552..19852576 (25 bp)
GCAAGGCACGCAAGTTTTTCTCTAT
LOC_Os07g33220
Os.14331.1.S1_at--1020--5171Chr07:19852561..19852585 (25 bp)
GCAAGTTTTTCTCTATGTGTGTCAC
LOC_Os07g33220
Os.14331.1.S1_at--739--8671Chr07:19852576..19852600 (25 bp)
TGTGTGTCACATCATATTGGCTGGA
LOC_Os07g33220
Os.14331.1.S1_at--116--231Chr07:19852589..19852613 (25 bp)
ATATTGGCTGGACCGTGGTGCTAAA
LOC_Os07g33220
Os.14331.1.S1_at--659--4251Chr07:19852601..19852625 (25 bp)
CCGTGGTGCTAAATTGGTCATCAAT
LOC_Os07g33220
Os.14331.1.S1_at--425--7691Chr07:19852638..19852662 (25 bp)
GGGTATATTTGGTCATTTGCATAAT
LOC_Os07g33220
Os.14331.1.S1_at--292--4951Chr07:19852656..19852680 (25 bp)
GCATAATTTCTTGCAATTGTAACCT
LOC_Os07g33220
Os.14331.1.S1_at--978--9751Chr07:19852687..19852711 (25 bp)
TAATCTCCCTGATTCCTATCAACAA
LOC_Os07g33220
Os.14331.1.S1_at--1133--5471Chr07:19852719..19852743 (25 bp)
GAACATCTGTACATATGCCCCAAAG
LOC_Os07g33220
Target Sequence 
GTTGTTCTTCAACCTAGCGGGAAAGTGAGGTGGTGAGTGTGCAACTATTGGGAGAGTTATTGCTGCCAATTGCAAGGCAC
GCAAGTTTTTCTCTATGTGTGTCACATCATATTGGCTGGACCGTGGTGCTAAATTGGTCATCAATGATTCTTTTTTTGGG
TATATTTGGTCATTTGCATAATTTCTTGCAATTGTAACCTAATTAATAATCTCCCTGATTCCTATCAACAATGATATTGA
ACATCTGTACATATGCCCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis