Browse Element(s) Details


Os.14380.1.S1_s_at

Description gb:AK061447.1
DB_XREF= gi:32971465
TID=Os.14380.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-D10, full insert sequence.
FL= gb:AK061447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4430011/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14380.1.S1_s_at--400--8191Chr02:26796115..26796139 (25 bp)
GGAAGCAATGTTTAGCCAGAATAGC
LOC_Os02g44300
Os.14380.1.S1_s_at--803--9991Chr02:26796136..26796160 (25 bp)
TAGCTGCAAAACATACGCATCGTTT
LOC_Os02g44300
Os.14380.1.S1_s_at--781--4971Chr02:26796152..26796176 (25 bp)
GCATCGTTTTGCAGAATTTTGTCCC
LOC_Os02g44300
Os.14380.1.S1_s_at--1092--5011Chr02:26796162..26796186 (25 bp)
GCAGAATTTTGTCCCTCTGGCTGAT
LOC_Os02g44300
Os.14380.1.S1_s_at--761--3771Chr02:26796176..26796200 (25 bp)
CTCTGGCTGATCAATTCTTTCTGTT
LOC_Os02g44300
Os.14380.1.S1_s_at--456--3151Chr02:26796188..26796212 (25 bp)
AATTCTTTCTGTTTCTCTTGGTAGA
LOC_Os02g44300
Os.14380.1.S1_s_at--563--10391Chr02:26796227..26796251 (25 bp)
TTATAGGTGGTTGTCTTCCGTTCTT
LOC_Os02g44300
Os.14380.1.S1_s_at--381--7651Chr02:26796280..26796304 (25 bp)
GGGAGAGAACCATTCATTGTAGATA
LOC_Os02g44300
Os.14380.1.S1_s_at--9--5631Chr02:26796305..26796329 (25 bp)
GACAAATAGGCGTTCTATCTCTGAA
LOC_Os02g44300
Os.14380.1.S1_s_at--849--8371Chr02:26796313..26796337 (25 bp)
GGCGTTCTATCTCTGAATTGTTCAT
LOC_Os02g44300
Os.14380.1.S1_s_at--212--7891Chr02:26796353..26796377 (25 bp)
GGTTCATTATACACACACGTTTGCT
LOC_Os02g44300
Target Sequence 
GGAAGCAATGTTTAGCCAGAATAGCTGCAAAACATACGCATCGTTTTGCAGAATTTTGTCCCTCTGGCTGATCAATTCTT
TCTGTTTCTCTTGGTAGAAATATATTTCTTCATTATAGGTGGTTGTCTTCCGTTCTTNTGAAGTATAATATNCCTCTTAA
AGAATGGGAGAGAACCATTCATTGTAGATAGACAAATAGGCGTTCTATCTCTGAATTGTTCATATATAATAAACCTCNGG
TTCATTATACACACACGTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14380.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis