Browse Element(s) Details


Os.14392.1.S1_at

Description gb:AK105714.1
DB_XREF= gi:32990923
TID=Os.14392.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.1 (P0686E09.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F01, full insert sequence.
FL= gb:AK058983.1 gb:AK105714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4295011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42900Os.41269.1.S1_at11/111+24735317..24737308ABC-2 type transporter family protein, expressed
LOC_Os01g42909NANA1+24742567..24743696hypothetical protein
LOC_Os01g42920NANA1+24747331..24749991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42934OsAffx.10633.1.S1_at1/111+24751060..24753178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42950Os.14392.1.S1_at11/111+24755490..24763139protein kinase family protein, putative, expressed
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14392.1.S1_at--35--4551Chr01:24762541..24762565 (25 bp)
GCCCTCTATCTTCGTTTTGCAAATG
LOC_Os01g42950
Os.14392.1.S1_at--264--5351Chr01:24762568..24762592 (25 bp)
GAAGTTCCTATATGGTGAGCATCAT
LOC_Os01g42950
Os.14392.1.S1_at--501--8911Chr01:24762583..24762607 (25 bp)
TGAGCATCATGCCTTTTTTCTTCCC
LOC_Os01g42950
Os.14392.1.S1_at--692--9071Chr01:24762687..24762711 (25 bp)
TGCTTCAGAGCCTTCCAGAGGTTAC
LOC_Os01g42950
Os.14392.1.S1_at--103--1471Chr01:24762712..24762736 (25 bp)
AGAATGTTCCCTTTCTCAGGAGTCA
LOC_Os01g42950
Os.14392.1.S1_at--659--991Chr01:24762736..24762760 (25 bp)
AGGATGTCTTCTTCCACACTTGGTC
LOC_Os01g42950
Os.14392.1.S1_at--108--6871Chr01:24763012..24763036 (25 bp)
GTATAGGCCCATCAACACAACAGTA
LOC_Os01g42950
Os.14392.1.S1_at--478--9731Chr01:24763035..24763059 (25 bp)
TAACCGTTGTCGATAGAAACCCGTG
LOC_Os01g42950
Os.14392.1.S1_at--742--5551Chr01:24763050..24763074 (25 bp)
GAAACCCGTGTCTTCTGTGAATTGT
LOC_Os01g42950
Os.14392.1.S1_at--481--6131Chr01:24763088..24763112 (25 bp)
GAGGGTGAACGTGCATTTCTTTTTT
LOC_Os01g42950
Os.14392.1.S1_at--1108--10331Chr01:24763111..24763135 (25 bp)
TTTTGGGTCAGGTCACCACCTTGAC
LOC_Os01g42950
Target Sequence 
GCCCTCTATCTTCGTTTTGCAAATGTTGAAGTTCCTATATGGTGAGCATCATGCCTTTTTTCTTCCCAACCTGCTTGCGG
CAGTAGTGTATTTACATGTCAGTTTTGCAAACTGGATGGTCTGAGACTGAGGCCCCCAAATGAAGCTGCTTCAGAGCCTT
CCAGAGGTTACAGAATGTTCCCTTTCTCAGGAGTCAGGATGTCTTCTTCCACACTTGGTCNTAGTTGGACAGGCGAAACA
GGAGAAATTCTATTTGTGTATAATATATTTGTTCAGACGGCTGTAGATTGTAGAGTTCATGAATACAGTCAACATGTTTG
TTGGGATGTTTTGAATGCCCAGAATGTGCCACCACTCCACCAGGTTTAATGGGCCTCGTGCAAATGGACCCAAGGNCGAT
TTACTCAGATACTCCCCTCCCCTACATGTAATTCATTTATTCTGTGAAGGCCCCATGTTGTGTAGTCCAGAAGTATAGGC
CCATCAACACAACAGTAACCGTTGTCGATAGAAACCCGTGTCTTCTGTGAATTGTGATTAAAGTTGTTGAGGGTGAACGT
GCATTTCTTTTTTTTGGGTCAGGTCACCACCTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis