Browse Element(s) Details


Os.41269.1.S1_at

Description gb:NM_192788.1
DB_XREF= gi:34912659
GEN=P0410E01.34
TID=Os.41269.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41269 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative white protein; ATP-binding cassette transporter (P0410E01.34), mRNA.
PROD=putative white protein; ATP-binding cassettetransporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4290011/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein
LOC_Os01g42900Os.41269.1.S1_at11/111+24735317..24737308ABC-2 type transporter family protein, expressed
LOC_Os01g42909NANA1+24742567..24743696hypothetical protein
LOC_Os01g42920NANA1+24747331..24749991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42934OsAffx.10633.1.S1_at1/111+24751060..24753178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42950Os.14392.1.S1_at11/111+24755490..24763139protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41269.1.S1_at--215--3271Chr01:24735695..24735719 (25 bp)
CAACTCGTTCGTCGCGTGCTTCAGC
LOC_Os01g42900
Os.41269.1.S1_at--392--9611Chr01:24735636..24735660 (25 bp)
TCATCGCGGGCCTCATCGGCTGCTT
LOC_Os01g42900
Os.41269.1.S1_at--73--9291Chr01:24735601..24735625 (25 bp)
TCCGGCTACTTCGTGGCGAGCAAGA
LOC_Os01g42900
Os.41269.1.S1_at--807--7531Chr01:24735589..24735613 (25 bp)
GTGGCGAGCAAGAACATCCCCAGGT
LOC_Os01g42900
Os.41269.1.S1_at--851--5951Chr01:24735584..24735608 (25 bp)
GAGCAAGAACATCCCCAGGTACTGG
LOC_Os01g42900
Os.41269.1.S1_at--428--1431Chr01:24735579..24735603 (25 bp)
AGAACATCCCCAGGTACTGGGTGTT
LOC_Os01g42900
Os.41269.1.S1_at--117--8791Chr01:24735558..24735582 (25 bp)
TGTTCATGCACTACGCCAGCCTGTT
LOC_Os01g42900
Os.41269.1.S1_at--374--9031Chr01:24735552..24735576 (25 bp)
TGCACTACGCCAGCCTGTTCAAGTA
LOC_Os01g42900
Os.41269.1.S1_at--103--4391Chr01:24735544..24735568 (25 bp)
GCCAGCCTGTTCAAGTACCCGTTCG
LOC_Os01g42900
Os.41269.1.S1_at--965--8371Chr01:24735401..24735425 (25 bp)
GGCGAGCATGCGGTGGAGCAACGTC
LOC_Os01g42900
Os.41269.1.S1_at--381--9411Chr01:24735357..24735381 (25 bp)
TCGTCGGCTACAGGCTGCTCTGCTT
LOC_Os01g42900
Target Sequence 
CAACTCGTTCGTCGCGTGCTTCAGCGCGCTGGCGCCCAGCTACATCGTCGCCAACTCCCTCATCGCGGGCCTCATCGGCT
GCTTCTTCCTCTTCTCCGGCTACTTCGTGGCGAGCAAGAACATCCCCAGGTACTGGGTGTTCATGCACTACGCCAGCCTG
TTCAAGTACCCGTTCGAGGCGTTCCTCGTCAACGAGTACGGCGGCGCGCGCGGCGGCGCCGAGTGCCTCGCCGAGGTCGG
CGGGGGGCTCTGCGTGCTCGACGGCGCCACGCTGCTGCGGCAGCAGGGGATGCGGGCGAGCATGCGGTGGAGCAACGTCG
CCGTCATGCTCGGCTTCGTCGTCGGCTACAGGCTGCTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis