Browse Element(s) Details


Os.1041.1.S1_x_at

Description gb:CB670875
DB_XREF= gi:29674600
DB_XREF=OSJNEe04C23.r
CLONE=OSJNEe04C23
TID=Os.1041.1
CNT=26
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.1041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0410E01.27 (P0410E01.27), mRNA
FL= gb:AK067422.1 gb:AK121767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4285011/11E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein
LOC_Os01g42900Os.41269.1.S1_at11/111+24735317..24737308ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042050
GO:0006914biological_processautophagy
GO:0007568biological_processaging
GO:0019779molecular_functionAPG8 activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1041.1.S1_x_at--16--8451Chr01:24708863..24708887 (25 bp)
GGCCATCCTGTATCACCTAATGAAG
LOC_Os01g42850
Os.1041.1.S1_x_at--268--5351Chr01:24708824..24708848 (25 bp)
GAAGATTGCAAACGCCTCCAGGAGT
LOC_Os01g42850
Os.1041.1.S1_x_at--87--6631Chr01:24708801..24708825 (25 bp)
GTTGGTATCTTCTCATGATGCTGTC
LOC_Os01g42850
Os.1041.1.S1_x_at--731--711Chr01:24708787..24708811 (25 bp)
ATGATGCTGTCTTCTTGCTGACCGA
LOC_Os01g42850
Os.1041.1.S1_x_at--1018--2811Chr01:24708753..24708777 (25 bp)
AAGTAGGTGGCTTCCAACACTTCTC
LOC_Os01g42850
Os.1041.1.S1_x_at--1052--10711Chr01:24708547..24708571 (25 bp)
TTGCTGCTGCTGATACACTGTCTGC
LOC_Os01g42850
Os.1041.1.S1_x_at--287--3011Chr01:24708480..24708503 (24 bp)
AATGACGTCGTTGCTCCTGTTGATT
LOC_Os01g42850
Os.1041.1.S1_x_at--286--4691Chr01:24708283..24708307 (25 bp)
GCGGCAGACCTCTTCACAAGAATGT
LOC_Os01g42850
Os.1041.1.S1_x_at--1017--6251Chr01:24708124..24708144 (21 bp)
GATGGGATCCATGCTCCAGGAGAGA
LOC_Os01g42850
Os.1041.1.S1_x_at--378--2071Chr01:24708074..24708098 (25 bp)
ACTTGGTCTATTGCCGCATCAGATA
LOC_Os01g42850
Os.1041.1.S1_x_at--466--6171Chr01:24708048..24708072 (25 bp)
GAGGATCACTCTCGCAGTACAACTT
LOC_Os01g42850
Target Sequence 
GGCCATCCTGTATCACCTAATGAAGCAGTCAGTGTGCTTGAAGATTGCAAACGCCTCCAGGAGTTGGTATCTTCTCATGA
TGCTGTCTTCTTGCTGACCGACACAAGGGAAAGTAGGTGGCTTCCAACACTTCTCTGCGCAAATGAAAACAAGATTGCTA
TTACTGCAGCATTAGGATATGACAGTTACCTTGTCATGCGACATGGGGCTGGTCCAGGCACGAATTGTGGAAGTCCAGAT
GTGGTTGCTGCTGCTGATACACTGTCTGCAGAAGATGTTCTTGGTCGTCAGAGACTAGGATGTTATTTCTGCAATGACGT
CGTTGCTCCTGTTGATTCCGTGTCCAACCGAACACTGGATCAACAATGTACAGTAACACGGCCTGGATTGTCCTCCATTA
CATCTGGCTGTGCGGCAGACCTCTTCACAAGAATGTTACATCATCCAGATGGGATCCATGCTCCAGGAGAGATTGCTGGC
ACAAGCAGTGAGGGTCCACTTGGTCTATTGCCGCATCAGATACGAGGATCACTCTCGCAGTACAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1041.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis