Browse Element(s) Details


Os.5871.1.S1_s_at

Description gb:AK106098.1
DB_XREF= gi:32991307
TID=Os.5871.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C03, full insert sequence.
FL= gb:AK106098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4283011/11Adaptin ear-binding coat-associated protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006858biological_processextracellular transport
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5871.1.S1_s_at--416--9871Chr01:24706334..24706358 (25 bp)
TACAGATTCTGGCATCGCGGCTTCT
LOC_Os01g42830
Os.5871.1.S1_s_at--1048--10491Chr01:24706362..24706386 (25 bp)
TTCAAAGCGGAGTTTCCTTCCCAAG
LOC_Os01g42830
Os.5871.1.S1_s_at--345--3871Chr01:24706411..24706435 (25 bp)
CTGATACCACTCCTTTCAAAGCAGA
LOC_Os01g42830
Os.5871.1.S1_s_at--483--10571Chr01:24706445..24706469 (25 bp)
TTCTCATGAACAACCAGCCGCGGAT
LOC_Os01g42830
Os.5871.1.S1_s_at--863--5291Chr01:24706535..24706559 (25 bp)
GAAGGCCCCTCAAGAGAGCGTGGAC
LOC_Os01g42830
Os.5871.1.S1_s_at--795--1851Chr01:24706561..24706585 (25 bp)
ACGACTTCGGAGACTTTCAGGCAGC
LOC_Os01g42830
Os.5871.1.S1_s_at--1123--8251Chr01:24706580..24706604 (25 bp)
GGCAGCTGGGTGAATCATGTATCTT
LOC_Os01g42830
Os.5871.1.S1_s_at--326--3171Chr01:24706626..24706650 (25 bp)
AATTGCTCCTTTGATTTTCCATGTT
LOC_Os01g42830
Os.5871.1.S1_s_at--222--6551Chr01:24706638..24706662 (25 bp)
GATTTTCCATGTTCCATCAGTTGTG
LOC_Os01g42830
Os.5871.1.S1_s_at--206--411Chr01:24706653..24706677 (25 bp)
ATCAGTTGTGACTTCTGCCGGCACA
LOC_Os01g42830
Os.5871.1.S1_s_at--27--4271Chr01:24706670..24706694 (25 bp)
CCGGCACATGAGTTGCTGTACAGTA
LOC_Os01g42830
Target Sequence 
TACAGATTCTGGCATCGCGGCTTCTCCGTTCAAAGCGGAGTTTCCTTCCCAAGACCAACCAGCTGCTGATACTGGAGCTG
ATACCACTCCTTTCAAAGCAGAATTTCCTTCTTCTCATGAACAACCAGCCGCGGATAACGTCGCTTCTTCCCCACCACCG
AAAGCAGAAGCTGCTCCTCAGGAGCAACCAACTGCAGCAGAGAAGGCCCCTCAAGAGAGCGTGGACGACGACTTCGGAGA
CTTTCAGGCAGCTGGGTGAATCATGTATCTTGTACATACCACATGTTACTCAAATTGCTCCTTTGATTTTCCATGTTCCA
TCAGTTGTGACTTCTGCCGGCACATGAGTTGCTGTACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5871.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis