Browse Element(s) Details


Os.5871.2.S1_at

Description gb:AK103190.1
DB_XREF= gi:32988399
TID=Os.5871.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121N24, full insert sequence.
FL= gb:AK103190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g428309/11Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os09g137401/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed
LOC_Os01g42880Os.21615.1.S1_at11/111+24724406..24727553Transferase family protein, expressed
LOC_Os01g42890OsAffx.11447.2.S1_s_at11/111+24728454..24728888hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006858biological_processextracellular transport
GO:0009910biological_processnegative regulation of flower development
GO:0031062biological_processpositive regulation of histone methylation
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
GO:0042800molecular_functionhistone lysine N-methyltransferase activity (H3-K4 specific)
GO:0046975molecular_functionhistone lysine N-methyltransferase activity (H3-K36 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5871.2.S1_at--1122--8471Chr01:24705414..24705438 (25 bp)
TGGCTGGGATTTTCTGATGTTTGGC
LOC_Os01g42830
Os.5871.2.S1_at--108--4731Chr01:24705416..24705440 (25 bp)
GCTGGGATTTTCTGATGTTTGGCCT
LOC_Os01g42830
Os.5871.2.S1_at--356--7672Chr01:24705419..24705443 (25 bp)
GGGATTTTCTGATGTTTGGCCTTAT
LOC_Os01g42830
Os.5871.2.S1_at--55--6551Chr01:24705421..24705445 (25 bp)
GATTTTCTGATGTTTGGCCTTATTC
LOC_Os01g42830
Os.5871.2.S1_at--345--10391Chr01:24705423..24705447 (25 bp)
TTTTCTGATGTTTGGCCTTATTCTT
LOC_Os01g42830
Os.5871.2.S1_at--1063--3851Chr01:24705427..24705451 (25 bp)
CTGATGTTTGGCCTTATTCTTTCTC
LOC_Os01g42830
Os.5871.2.S1_at--230--751Chr01:24705430..24705454 (25 bp)
ATGTTTGGCCTTATTCTTTCTCCAA
LOC_Os01g42830
Os.5871.2.S1_at--882--6851Chr01:24705432..24705456 (25 bp)
GTTTGGCCTTATTCTTTCTCCAATT
LOC_Os01g42830
Os.5871.2.S1_at--458--10871Chr01:24705434..24705458 (25 bp)
TTGGCCTTATTCTTTCTCCAATTCC
LOC_Os01g42830
Os.5871.2.S1_at--293--7271NONE
TCTCCAATTCCCTAGAAAGAGTCCG
NONE
Os.5871.2.S1_at--1086--4331NONE
CCAATTCCCTAGAAAGAGTCCGGCG
NONE
Target Sequence 
TGGCTGGGATTTTCTGATGTTTGGCCTTATTCTTTCTCCAATTCCCTAGAAAGAGTCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5871.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis