Browse Element(s) Details


Os.41273.1.S1_at

Description gb:AK120636.1
DB_XREF= gi:37990259
TID=Os.41273.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0410E01.24 (P0410E01.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153K01, full insert sequence.
FL= gb:AK120636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4282011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed
LOC_Os01g42860NANA1+24719919..24720137subtilisin-chymotrypsin inhibitor 2, putative, expressed
LOC_Os01g42870Os.1044.1.S1_at11/111+24721928..24723659Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41273.1.S1_at--106--8551Chr01:24697744..24697768 (25 bp)
TGGAGCCTCATCACTGTACCGCATG
LOC_Os01g42820
Os.41273.1.S1_at--61--6971Chr01:24697729..24697753 (25 bp)
GTACCGCATGCAACAGGGTTCGGGT
LOC_Os01g42820
Os.41273.1.S1_at--1097--1751Chr01:24697624..24697648 (25 bp)
ACCTGGACCAGGTGGTAGAGCTCCT
LOC_Os01g42820
Os.41273.1.S1_at--599--10031Chr01:24697609..24697633 (25 bp)
TAGAGCTCCTATGTACCCCAATGTG
LOC_Os01g42820
Os.41273.1.S1_at--293--2991Chr01:24697591..24697614 (24 bp)
AATGTGCCTCCTTATTTCTGAGGTG
LOC_Os01g42820
Os.41273.1.S1_at--767--1051Chr01:24696269..24696293 (25 bp)
AGGTGTGTGACAACTCTTGGGAGCA
LOC_Os01g42820
Os.41273.1.S1_at--160--1251Chr01:24696214..24696238 (25 bp)
AGTTGTCTGCTTACATGGATGTCTT
LOC_Os01g42820
Os.41273.1.S1_at--1085--10391Chr01:24696154..24696178 (25 bp)
TTTTGCTCTCAATTTTTCTGTTACA
LOC_Os01g42820
Os.41273.1.S1_at--722--4851Chr01:24696118..24696142 (25 bp)
GCTAGCTTAGTGTTTTCTGAGATCT
LOC_Os01g42820
Os.41273.1.S1_at--575--8891Chr01:24696061..24696085 (25 bp)
TGAGGTGTCGTTTCACATTGTTGTG
LOC_Os01g42820
Os.41273.1.S1_at--712--8611Chr01:24695992..24696016 (25 bp)
TGGTGCTTGGTTTATTTGCGTGACA
LOC_Os01g42820
Target Sequence 
TGGAGCCTCATCACTGTACCGCATGCAACAGGGTTCGGGTGGGCTTCCTTCTGGCGGGTATGGTGAGGGTAACTACCCTC
TTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGGTAGAGCTCCTATGTACCCCAATGTG
CCTCCTTATTTCTGAGGTGTGTGACAACTCTTGGGAGCATATGCTTTGAATGGTTGTGCTGAATTCAGAAGTTGTCTGCT
TACATGGATGTCTTGCATATTCNGGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAA
TTCAAGCTAGCTTAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGTGTCGTTTCACAT
TGTTGTGTAATGCTCATTGTCTTATGATATCCAGTTACTTNTGATTACATCTGGTGCTTGGTTTATTTGCGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis