Browse Element(s) Details


Os.14539.1.S1_at

Description gb:AK100221.1
DB_XREF= gi:32985430
TID=Os.14539.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0617C02.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047E19, full insert sequence.
FL= gb:AK060004.1 gb:AK100221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0160011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01550Os.20595.1.S1_a_at11/117+342234..348402Leucine Rich Repeat family protein, expressed
LOC_Os07g01560Os.316.1.S1_at11/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560Os.35004.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560OsAffx.7485.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01570NANA7+356762..357220hypothetical protein
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein
LOC_Os07g01600Os.14539.1.S1_at11/117+372110..373981Dirigent-like protein, expressed
LOC_Os07g01610NANA7+374522..376615retrotransposon protein, putative, unclassified
LOC_Os07g01620Os.16630.1.S1_at11/117+381818..382537Dirigent-like protein, expressed
LOC_Os07g01630Os.27990.1.S1_at10/117+382650..383470Dirigent-like protein, expressed
LOC_Os07g01640NANA7+386259..389308retrotransposon protein, putative, unclassified
LOC_Os07g01650NANA7+389938..395275transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14539.1.S1_at--267--5311Chr07:373720..373744 (25 bp)
GAAGGACCATATATACCTCTGAATC
LOC_Os07g01600
Os.14539.1.S1_at--262--6071Chr07:373764..373788 (25 bp)
GAGTTACAGGATCACGTCTCGTCGA
LOC_Os07g01600
Os.14539.1.S1_at--953--7151Chr07:373779..373803 (25 bp)
GTCTCGTCGACTACCTATGGCGTGA
LOC_Os07g01600
Os.14539.1.S1_at--437--2031Chr07:373788..373812 (25 bp)
ACTACCTATGGCGTGACTCATCGTC
LOC_Os07g01600
Os.14539.1.S1_at--214--8951Chr07:373801..373825 (25 bp)
TGACTCATCGTCACATGCTCATAGT
LOC_Os07g01600
Os.14539.1.S1_at--625--2091Chr07:373813..373837 (25 bp)
ACATGCTCATAGTGGCTAACTGGCT
LOC_Os07g01600
Os.14539.1.S1_at--522--8311Chr07:373826..373850 (25 bp)
GGCTAACTGGCTATGGATACTACTA
LOC_Os07g01600
Os.14539.1.S1_at--823--571Chr07:373859..373883 (25 bp)
ATCCATTTGGCCACACAATTTGTCA
LOC_Os07g01600
Os.14539.1.S1_at--688--3171Chr07:373874..373898 (25 bp)
CAATTTGTCACAATGCCCTTAATCA
LOC_Os07g01600
Os.14539.1.S1_at--463--9171Chr07:373887..373911 (25 bp)
TGCCCTTAATCATTGTGCTTTTCAA
LOC_Os07g01600
Os.14539.1.S1_at--761--9231Chr07:373945..373969 (25 bp)
TCCATATATAAACTGCACTACGTCT
LOC_Os07g01600
Target Sequence 
GAAGGACCATATATACCTCTGAATCTCTGATGATGGGAAATTAAGAGTTACAGGATCACGTCTCGTCGACTACCTATGGC
GTGACTCATCGTCACATGCTCATAGTGGCTAACTGGCTATGGATACTACTACTACAATAATCCATTTGGCCACACAATTT
GTCACAATGCCCTTAATCATTGTGCTTTTCAATAATTAACATANTTTCATGTTATGAATAATACCATCCATATATAAACT
GCACTACGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis