Browse Element(s) Details


Os.20595.1.S1_a_at

Description gb:AK067091.1
DB_XREF= gi:32977109
TID=Os.20595.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein phosphatase regulatory subunit-like (P0617C02.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G23, full insert sequence.
FL= gb:AK067091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0155011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified
LOC_Os07g01510NANA7+318364..321621retrotransposon protein, putative, unclassified
LOC_Os07g01520Os.20517.1.S1_at3/117+325036..327480hypothetical protein
LOC_Os07g01530Os.37338.1.S1_at11/117+331575..333127expressed protein
LOC_Os07g01540Os.34030.1.S1_a_at11/117+333525..342004calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g01550Os.20595.1.S1_a_at11/117+342234..348402Leucine Rich Repeat family protein, expressed
LOC_Os07g01560Os.316.1.S1_at11/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560Os.35004.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560OsAffx.7485.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01570NANA7+356762..357220hypothetical protein
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein
LOC_Os07g01600Os.14539.1.S1_at11/117+372110..373981Dirigent-like protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20595.1.S1_a_at--609--1531Chr07:346947..346971 (25 bp)
AGCATCCTATAAGAGCATCTGGCTC
LOC_Os07g01550
Os.20595.1.S1_a_at--1091--2771Chr07:346974..346998 (25 bp)
AAGAGGTATCGGACCGGCACACCCG
LOC_Os07g01550
Os.20595.1.S1_a_at--1074--8231Chr07:346989..347013 (25 bp)
GGCACACCCGCAAGATTTCTTCTTC
LOC_Os07g01550
Os.20595.1.S1_a_at--405--3551Chr07:347015..347039 (25 bp)
CATCGTTCCGATCGCAGCGGTAGAT
LOC_Os07g01550
Os.20595.1.S1_a_at--487--6391Chr07:347037..347061 (25 bp)
GATCGGATCGTAAATCCTCGAGGTT
LOC_Os07g01550
Os.20595.1.S1_a_at--768--3791Chr07:347053..347077 (25 bp)
CTCGAGGTTGGTGGCTAGCACATCC
LOC_Os07g01550
Os.20595.1.S1_a_at--941--10011Chr07:347068..347092 (25 bp)
TAGCACATCCTCTTACAAGGCACAG
LOC_Os07g01550
Os.20595.1.S1_a_at--538--9851Chr07:347081..347105 (25 bp)
TACAAGGCACAGAGTTCACGGCATG
LOC_Os07g01550
Os.20595.1.S1_a_at--196--1351Chr07:347091..347115 (25 bp)
AGAGTTCACGGCATGCGCGTTCTGG
LOC_Os07g01550
Os.20595.1.S1_a_at--855--8631Chr07:347113..347137 (25 bp)
TGGGCATGCCTCGAGCTCTTTTCTG
LOC_Os07g01550
Os.20595.1.S1_a_at--68--7531Chr07:347165..347189 (25 bp)
GTGGCAGCTTCAGGGCCTAGACTGA
LOC_Os07g01550
Target Sequence 
AGCATCCTATAAGAGCATCTGGCTCAAAAGAGGTATCGGACCGGCACACCCGCAAGATTTCTTCTTCCCATCGTTCCGAT
CGCAGCGGTAGATCGGATCGTAAATCCTCGAGGTTGGTGGCTAGCACATCCTCTTACAAGGCACAGAGTTCACGGCATGC
GCGTTCTGGGCATGCCTCGAGCTCTTTTCTGAAGAATCCAAGGGGCCGAAGCATGGCGGTGGCAGCTTCAGGGCCTAGAC
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20595.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis