Browse Element(s) Details


Os.37338.1.S1_at

Description gb:AK059175.1
DB_XREF= gi:32969193
TID=Os.37338.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D40788(S2938)~unknown protein (P0446F04.46), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F05, full insert sequence.
FL= gb:AK059175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0153011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01490Os.14671.1.S1_at11/117+305336..308043Kinesin-1, putative, expressed
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified
LOC_Os07g01510NANA7+318364..321621retrotransposon protein, putative, unclassified
LOC_Os07g01520Os.20517.1.S1_at3/117+325036..327480hypothetical protein
LOC_Os07g01530Os.37338.1.S1_at11/117+331575..333127expressed protein
LOC_Os07g01540Os.34030.1.S1_a_at11/117+333525..342004calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g01550Os.20595.1.S1_a_at11/117+342234..348402Leucine Rich Repeat family protein, expressed
LOC_Os07g01560Os.316.1.S1_at11/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560Os.35004.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560OsAffx.7485.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01570NANA7+356762..357220hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37338.1.S1_at--846--8671Chr07:332146..332170 (25 bp)
TGTTGGACGACATCCGGGCGTACGA
LOC_Os07g01530
Os.37338.1.S1_at--889--9091Chr07:332026..332050 (25 bp)
TGCTCGTCACCTGCCGCAAGGAGGA
LOC_Os07g01530
Os.37338.1.S1_at--228--5511Chr07:331893..331917 (25 bp)
GAAACAAGTCGGGTACAACGTCAAG
LOC_Os07g01530
Os.37338.1.S1_at--1107--5751Chr07:331865..331889 (25 bp)
GACGTGCTGTACAATGATCTCAAGG
LOC_Os07g01530
Os.37338.1.S1_at--724--811Chr07:331826..331850 (25 bp)
ATGGTCGGCAAGTGCCTCGGCCTGC
LOC_Os07g01530
Os.37338.1.S1_at--61--1191Chr07:331765..331789 (25 bp)
AGTACTGCACCTACGTTGATGACGA
LOC_Os07g01530
Os.37338.1.S1_at--43--5791Chr07:331745..331769 (25 bp)
GACGACGATGCCAAAACTACTCAAC
LOC_Os07g01530
Os.37338.1.S1_at--742--9651Chr07:331728..331752 (25 bp)
TACTCAACCCACTACTGCTAAAGGT
LOC_Os07g01530
Os.37338.1.S1_at--835--2011Chr07:331718..331742 (25 bp)
ACTACTGCTAAAGGTGCCGACGCCG
LOC_Os07g01530
Os.37338.1.S1_at--684--9611Chr07:331659..331683 (25 bp)
TCATCCATCCAAACACTATACTTAT
LOC_Os07g01530
Os.37338.1.S1_at--359--2991Chr07:331616..331640 (25 bp)
AATGTTTTGCTGCACACGCATGCTA
LOC_Os07g01530
Target Sequence 
TGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGCCGCCGCCCCACGGCGAGTGGAGCGAC
CGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGAGCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCAT
GGTGCGCACCGGCCGCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGTACCTGC
AGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACAATGATCTCAAGGTGGTGCAGGAGGNG
ATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCATCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGA
TGACGACGATGCCAAAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCGCCTAGA
TCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATGTTTTGCTGCACACGCATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis