Browse Element(s) Details


Os.14671.1.S1_at

Description gb:AK063949.1
DB_XREF= gi:32973967
TID=Os.14671.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinesin-related protein katA (P0446F04.41), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F03, full insert sequence.
FL= gb:AK063949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0149011/11Kinesin-1, putative, expressed
LOC_Os03g644156/11Kinesin-1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01440Os.7088.1.S1_at11/117+289331..290324Plastocyanin-like domain containing protein, expressed
LOC_Os07g01450OsAffx.16030.1.S1_at11/117+290941..292865DNA directed RNA polymerase, 7 kDa subunit family protein, expressed
LOC_Os07g01460Os.31269.1.S1_at11/117+298003..299724expressed protein
LOC_Os07g01470NANA7+301163..301648expressed protein
LOC_Os07g01480Os.27830.1.S1_at11/117+304308..305321Oxygen evolving enhancer protein 3 containing protein, expressed
LOC_Os07g01490Os.14671.1.S1_at11/117+305336..308043Kinesin-1, putative, expressed
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified
LOC_Os07g01510NANA7+318364..321621retrotransposon protein, putative, unclassified
LOC_Os07g01520Os.20517.1.S1_at3/117+325036..327480hypothetical protein
LOC_Os07g01530Os.37338.1.S1_at11/117+331575..333127expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009971biological_processmale meiotic spindle assembly (sensu Viridiplantae)
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005871cellular_componentkinesin complex
GO:0005872cellular_componentminus-end kinesin complex
GO:0005876cellular_componentspindle microtubule
GO:0009524cellular_componentphragmoplast
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0008569molecular_functionminus-end-directed microtubule motor activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14671.1.S1_at--703--2791Chr07:305969..305993 (25 bp)
AAGAGGAGCACGTTCCGTTCAGGAA
LOC_Os07g01490
Os.14671.1.S1_at--676--10711Chr07:305835..305952 (25 bp)
TTGCTACAGCCATGCCTTGGAGGAG
LOC_Os07g01490
Os.14671.1.S1_at--541--8712Chr07:305783..305807 (25 bp)
TGTCTCCAGAGGTGTCGTCTACAGG
LOC_Os07g01490
Os.14671.1.S1_at--316--7992Chr07:305758..305782 (25 bp)
GGAGTCAATTTGCTCGCTACGGTTC
LOC_Os07g01490
Os.14671.1.S1_at--36--9932Chr07:305741..305765 (25 bp)
TACGGTTCGCAGCACGGGTGAACTC
LOC_Os07g01490
Os.14671.1.S1_at--245--5472Chr07:305722..305746 (25 bp)
GAACTCGTGCGAGATTGGCATCCCT
LOC_Os07g01490
Os.14671.1.S1_at--544--7212Chr07:305696..305720 (25 bp)
GTCGTCAAACCCAAGTGCGTAGCTT
LOC_Os07g01490
Os.14671.1.S1_at--81--5012Chr07:2434294..2434317 (24 bp)
GCATGTGGCTTTGTTGATTGTACGA
NONE
Os.14671.1.S1_at--1125--6591Chr07:305517..305541 (25 bp)
GATTGTACGAGCATCGCATTGCATT
LOC_Os07g01490
Os.14671.1.S1_at--894--10231Chr07:305408..305432 (25 bp)
TATTGGAGAAGTGCCCTGTGTTGTG
LOC_Os07g01490
Os.14671.1.S1_at--470--8652Chr07:305382..305406 (25 bp)
TGGGCTGGCTTTGTTTGGATGATAA
LOC_Os07g01490
Target Sequence 
AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTNAACGTACTTGCTACAGCCATGCCTTGGAGGAGACTCGAAGACACT
TATGTTTGTGAATCTGTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCACGGGTGAACT
CGTGCGAGATTGGCATCCCTCGTCGTCAAACCCAAGTGCGTAGCTTGGCGCAAGGATGAGTTGGCTTGGACAAAATGAAT
GTCCATGACTAATTGTATTTGTGTGTTGTTTGAGGGATGCAATGGATCATTTGCATCCCCTCCNGTGTGTTGGTTGCTTA
GAGGGTGTGTATAATATTCTGATTTGGCATGTGGCTTTGTTGATTGTACGAGCATCGCATTGCATTACATTACAGATAGT
ACTGTAGTATCTAATTTGTGGCTGCATCAATGTGCAGTGGTAGTAACAAGATGTGAGGTTGGTTGTATTTTATTGGAGAA
GTGCCCTGTGTTGTGTTGGGCTGGCTTTGTTTGGATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis