Browse Element(s) Details


Os.31269.1.S1_at

Description gb:AK107603.1
DB_XREF= gi:32992812
TID=Os.31269.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0446F04.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-B08, full insert sequence.
FL= gb:AK107603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0146011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01430OsAffx.22848.4.S1_at2/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.4.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01430OsAffx.22848.3.S1_x_at1/117+270366..276325retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g01440Os.7088.1.S1_at11/117+289331..290324Plastocyanin-like domain containing protein, expressed
LOC_Os07g01450OsAffx.16030.1.S1_at11/117+290941..292865DNA directed RNA polymerase, 7 kDa subunit family protein, expressed
LOC_Os07g01460Os.31269.1.S1_at11/117+298003..299724expressed protein
LOC_Os07g01470NANA7+301163..301648expressed protein
LOC_Os07g01480Os.27830.1.S1_at11/117+304308..305321Oxygen evolving enhancer protein 3 containing protein, expressed
LOC_Os07g01490Os.14671.1.S1_at11/117+305336..308043Kinesin-1, putative, expressed
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified
LOC_Os07g01510NANA7+318364..321621retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31269.1.S1_at--1160--10631Chr07:299079..299103 (25 bp)
TTCGCAGCTCGCCATGTCTCAGGAA
LOC_Os07g01460
Os.31269.1.S1_at--460--931Chr07:299099..299122 (24 bp)
AGGAACCTTTTCATCACCAACGAGT
LOC_Os07g01460
Os.31269.1.S1_at--899--4971Chr07:299277..299301 (25 bp)
GCATCCCAGGGAGATCTCGATCGAT
LOC_Os07g01460
Os.31269.1.S1_at--371--1511Chr07:299312..299336 (25 bp)
AGCAGTATCCTGCAACGCCGGAGTT
LOC_Os07g01460
Os.31269.1.S1_at--1095--471Chr07:299369..299393 (25 bp)
ATCTGAGGCGCTTCTTCATGTTCAA
LOC_Os07g01460
Os.31269.1.S1_at--1142--3211Chr07:299427..299451 (25 bp)
CAAGTTCGTCTTAGGAAGCTCATCC
LOC_Os07g01460
Os.31269.1.S1_at--340--1231Chr07:299471..299495 (25 bp)
AGTTCGGTGTCACTGATTACCTCGG
LOC_Os07g01460
Os.31269.1.S1_at--474--6551Chr07:299485..299509 (25 bp)
GATTACCTCGGCAACGACTGGAGTT
LOC_Os07g01460
Os.31269.1.S1_at--785--9991Chr07:299525..299549 (25 bp)
TAGCCTCGCTCTAGTTGATTCGCTA
LOC_Os07g01460
Os.31269.1.S1_at--909--9271Chr07:299556..299580 (25 bp)
TCCTGTGTGTGTCTTCATCGACATT
LOC_Os07g01460
Os.31269.1.S1_at--414--7351Chr07:299636..299660 (25 bp)
GTGCAACTGCACACAGACAATCCAT
LOC_Os07g01460
Target Sequence 
TTCGCAGCTCGCCATGTCTCAGGAACCTTTTCATCACCAACGAGTTGGAGCATCCCAGGGAGATCTCGATCGATGAGAAT
CGGGAGCAGTATCCTGCAACGCCGGAGTTCCTGTTCGACGCCGTGCCCGGCCGGCTGACCCATCTGAGGCGCTTCTTCAT
GTTCAACTTCAGCGGCAACCGCAACGAGATCAGCATCATCAAGTTCGTCTTAGGAAGCTCATCCATTTCCATCAACCCGG
ACCAGTTCGGTGTCACTGATTACCTCGGCAACGACTGGAGTTCCACCCAGCTTATCCTAGCCTCGCTCTAGTTGATTCGC
TAGCTCTCTCCTGTGTGTGTCTTCATCGACATTTTATCATCGATAGATCTGGCTAGTAGATGATGCCAGATGTTATTGCA
GATATATGGTGCAACTGCACACAGACAATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis