Browse Element(s) Details


Os.27830.1.S1_at

Description gb:AK068377.1
DB_XREF= gi:32978395
TID=Os.27830.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, AT3g01440 (P0446F04.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148M09, full insert sequence.
FL= gb:AK068377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0148011/11Oxygen evolving enhancer protein 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01440Os.7088.1.S1_at11/117+289331..290324Plastocyanin-like domain containing protein, expressed
LOC_Os07g01450OsAffx.16030.1.S1_at11/117+290941..292865DNA directed RNA polymerase, 7 kDa subunit family protein, expressed
LOC_Os07g01460Os.31269.1.S1_at11/117+298003..299724expressed protein
LOC_Os07g01470NANA7+301163..301648expressed protein
LOC_Os07g01480Os.27830.1.S1_at11/117+304308..305321Oxygen evolving enhancer protein 3 containing protein, expressed
LOC_Os07g01490Os.14671.1.S1_at11/117+305336..308043Kinesin-1, putative, expressed
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified
LOC_Os07g01510NANA7+318364..321621retrotransposon protein, putative, unclassified
LOC_Os07g01520Os.20517.1.S1_at3/117+325036..327480hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019684biological_processphotosynthesis, light reaction
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27830.1.S1_at--883--10691Chr07:304625..304649 (25 bp)
TTGCCGGTGCCAAAGATTGTCAACA
LOC_Os07g01480
Os.27830.1.S1_at--493--6712Chr07:304820..304844 (25 bp)
GTTCGTGAGGAACGGCATCTACATA
LOC_Os07g01480
Os.27830.1.S1_at--646--452Chr07:304836..304860 (25 bp)
ATCTACATAGCCGACATCGGGCCGA
LOC_Os07g01480
Os.27830.1.S1_at--658--10611Chr07:304995..305019 (25 bp)
TTCGACTTCGACAAGCTCATCTCCG
LOC_Os07g01480
Os.27830.1.S1_at--54--4692Chr07:305101..305125 (25 bp)
GCGGCACCAAGGACGACACCCAGAT
LOC_Os07g01480
Os.27830.1.S1_at--298--2813Chr07:305148..305172 (25 bp)
AAGATCATCCTCCAGGAGGTCATGG
LOC_Os07g01480
Os.27830.1.S1_at--942--5131Chr07:305172..305196 (25 bp)
GCAAAGATGGCCTAGTGTTTCTGTT
LOC_Os07g01480
Os.27830.1.S1_at--880--6831Chr07:305188..305212 (25 bp)
GTTTCTGTTGGTGTACTAGCTAGTA
LOC_Os07g01480
Os.27830.1.S1_at--37--10012Chr12:19905526..19905563 (24 bp)
TAGCTAGTACTGTATTTCTCTCACT
NONE
Os.27830.1.S1_at--871--191Chr07:305217..305241 (25 bp)
ATTTCTCTCACTTTACTTGTCATAC
LOC_Os07g01480
Os.27830.1.S1_at--604--3811Chr07:305271..305295 (25 bp)
CTCCTCATCACACACATATTCATAT
LOC_Os07g01480
Target Sequence 
TTGCCGGTGCCAAAGATTGTCAACAAGGAGCTGAACAATGGCGAGACGGGGAGCCGGACGTTCGTGAGGAACGGCATCTA
CATAGCCGACATCGGGCCGAGCTACGCGGCGCACGCGTACAGGCTGCGGAGCACGGCGTTCGACCTGCTGGCGCTGGAGG
ACCTGCTGGGCAACAACGCCGACAGGGCCAACTACGTCACCAAGTACCTCCGCCTCAAGTCCACCTTCATGTACTTCGAC
TTCGACAAGCTCATCTCCGCCGCCTCCGACGACCAGCGCCCCCCGCTGCTCGACCTCGCCACCCGCCTCTTCGACAGCTT
CGAGCGCCTCCAGAAGGCCTGCGGCACCAAGGACGACACCCAGATCGGCTCCTCCTATGCCGACACCAAGATCATCCTCC
AGGAGGTCATGGCAAAGATGGCCTAGTGTTTCTGTTGGTGTACTAGCTAGTACTGTATTTCTCTCACTTTACTTGTCATA
CATACATATATATNNATATATATATATATCCTCCTCATCACACACATATTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis