Browse Element(s) Details


Os.14544.1.S1_at

Description gb:AK067585.1
DB_XREF= gi:32977603
TID=Os.14544.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111A16, full insert sequence.
FL= gb:AK067585.1 gb:AK060419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5976011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59740Os.12389.1.S1_x_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59740Os.12389.1.S1_at11/113+33945831..33948743ADP-ribosylation factor, putative, expressed
LOC_Os03g59750Os.21886.1.S1_at10/113+33949799..33954576DNA gyrase subunit A, putative, expressed
LOC_Os03g59754NANA3+33965067..33965465hypothetical protein
LOC_Os03g59760Os.14544.1.S1_at11/113+33970386..33972964Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g59770Os.50152.1.S1_at11/113+33975180..33976026EF hand family protein, expressed
LOC_Os03g59770OsAffx.3648.1.S1_x_at1/113+33975180..33976026EF hand family protein, expressed
LOC_Os03g59780NANA3+33985215..33985823hypothetical protein
LOC_Os03g59790OsAffx.3648.1.S1_x_at11/113+33989380..33989982EF hand family protein
LOC_Os03g59810OsAffx.20329.1.S1_at2/113+33995491..33999903retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14544.1.S1_at--626--7331Chr03:33972268..33972292 (25 bp)
GTGCACTTTTCTCAAATCCATCATC
LOC_Os03g59760
Os.14544.1.S1_at--103--371Chr03:33972316..33972340 (25 bp)
ATAATGCACCACACTCTTCTGAGAG
LOC_Os03g59760
Os.14544.1.S1_at--799--7551Chr03:33972464..33972488 (25 bp)
GGGCCTGGGCTTGCAATATGTCAAT
LOC_Os03g59760
Os.14544.1.S1_at--58--2971Chr03:33972499..33972523 (25 bp)
AATGGGACTCCTGAGAGGCCGGCAT
LOC_Os03g59760
Os.14544.1.S1_at--577--891Chr03:33972514..33972538 (25 bp)
AGGCCGGCATCTTTATATCTCGTGG
LOC_Os03g59760
Os.14544.1.S1_at--69--2711Chr03:33972574..33972598 (25 bp)
AAGCTATTCGCGTTTCCTTTATGAA
LOC_Os03g59760
Os.14544.1.S1_at--145--1211Chr03:33972618..33972642 (25 bp)
AGTTTGGTGCCTGTTATGTCTAATT
LOC_Os03g59760
Os.14544.1.S1_at--859--9951Chr03:33972658..33972682 (25 bp)
TAGCCTCAAGCATGTTTACCTACTC
LOC_Os03g59760
Os.14544.1.S1_at--238--2511Chr03:33972773..33972797 (25 bp)
AACATTGGCATTTCGCACTGCTTTG
LOC_Os03g59760
Os.14544.1.S1_at--1048--2031Chr03:33972852..33972876 (25 bp)
ACTTTGTCATCTGCATACTTGTGGA
LOC_Os03g59760
Os.14544.1.S1_at--820--7711Chr03:33972908..33972932 (25 bp)
GGGTGATCACATCTGCATTTATCCA
LOC_Os03g59760
Target Sequence 
GTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAAGC
CAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGAGGCCGGCATCTTTATATCTCGT
GGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACAAGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAAT
CAGTTTGGTGCCTGTTATGTCTAATTATGTAAAATAAAATTTAGCCTCAAGCATGTTTACCTACTCTCAAAAACTTGATC
GGGGCCAGAGAACTGCTGATCTGGTTAGCAGCTTGACCAATGCAAGGCTACTTCAGTACTATATATGGGGATNTCCAACA
TTGGCATTTCGCACTGCTTTGTCAATTAAAGAACCCTGTTAGAACAAAGCTGCAGAACAGTTACAGTGCGAAGCAACTTT
GTCATCTGCATACTTGTGGAATTTAGGAGTTGCTGATCTAAACTATGATTAGGGTGATCACATCTGCATTTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis