Browse Element(s) Details


Os.14666.2.S1_x_at

Description gb:CB641780
DB_XREF= gi:29636771
DB_XREF=OSJNEb01J17.r
CLONE=OSJNEb01J17
TID=Os.14666.2
CNT=20
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.14666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075J15, full insert sequence
FL= gb:AK065170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2366011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein
LOC_Os09g23640NANA9+14045753..14049423ABC-2 type transporter family protein
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23660Os.50959.1.S1_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23660Os.14666.2.S1_x_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14666.2.S1_x_at--1094--3591Chr09:14055650..14055674 (25 bp)
CATTGGCCAAGAGCCCGCTAGAGAG
LOC_Os09g23660
Os.14666.2.S1_x_at--349--2851Chr09:14055594..14055618 (25 bp)
AAGTCATCTTGCACGGACATTGCCC
LOC_Os09g23660
Os.14666.2.S1_x_at--695--9711Chr09:14055567..14055591 (25 bp)
TCAAGCAACCGCGACGAATCATTGT
LOC_Os09g23660
Os.14666.2.S1_x_at--273--5251Chr09:14055552..14055576 (25 bp)
GAATCATTGTCATTAGGCCAGCCAA
LOC_Os09g23660
Os.14666.2.S1_x_at--611--7411Chr09:14055472..14055496 (25 bp)
GTGATTGCCCAGTGTCCATAGATTC
LOC_Os09g23660
Os.14666.2.S1_x_at--498--6571Chr09:14055452..14055476 (25 bp)
GATTCGGCCATTCTGATTGATGCAA
LOC_Os09g23660
Os.14666.2.S1_x_at--1014--7871Chr09:14055315..14055339 (25 bp)
GGTTAATTCGCTTAATGCTGGTCTA
LOC_Os09g23660
Os.14666.2.S1_x_at--1031--611Chr09:14055301..14055325 (25 bp)
ATGCTGGTCTAGCTGGTGCAAACCC
LOC_Os09g23660
Os.14666.2.S1_x_at--75--9211Chr09:14055258..14055282 (25 bp)
TGCCACTTGCAGACTCTTGAGTATT
LOC_Os09g23660
Os.14666.2.S1_x_at--903--6071Chr09:14055240..14055264 (25 bp)
GAGTATTTTTTGTTGGCCTTGCGCC
LOC_Os09g23660
Os.14666.2.S1_x_at--794--8431Chr09:14055226..14055250 (25 bp)
GGCCTTGCGCCATTGTATTGCAGAA
LOC_Os09g23660
Target Sequence 
CATTGGCCAAGAGCCCGCTAGAGAGCAGCGACACAATGGGGAGTGCCAATGACAACAAGTCATCTTGCACGGACATTGCC
CTCTCAAGCAACCGCGACGAATCATTGTCATTAGGCCAGCCAAGGACCATCAGCTTNTGCGAGGAGTCCCCCAGTACAAA
GCTACAAATCTGATCTGGGTGATTGCCCAGTGTCCATAGATTCGGCCATTCTGATTGATGCAAAAGACATAAAGAATCTT
GTGCATTCAAGCGGGGAGGAGGGCTTGGGAAGAGGCATAATATATAGTATGTTATTGATGGTGTTCTTGTTCTTGTTTAT
GATGTGTTTTCACATGGTTAATTCGCTTAATGCTGGTCTAGCTGGTGCAAACCCCCCAACTAACAAGAGAGCTGCCACTT
GCAGACTCTTGAGTATTTTTTGTTGGCCTTGCGCCATTGTATTGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14666.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis