Browse Element(s) Details


Os.14676.1.S1_at

Description gb:AK064533.1
DB_XREF= gi:32974551
TID=Os.14676.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (OJ1567_G09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H06, full insert sequence.
FL= gb:AK064533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0192011/11nucleolar GTP-binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14676.1.S1_at--8--1611Chr07:558091..558115 (25 bp)
AGCTGCTGGTCATCACTGGTTTCAG
LOC_Os07g01920
Os.14676.1.S1_at--256--8211Chr07:557924..557948 (25 bp)
GGAAGGCCTGATTATCCAATCTGCT
LOC_Os07g01920
Os.14676.1.S1_at--1135--3051Chr07:557907..557931 (25 bp)
AATCTGCTGGACTTGTTGTGCTCTG
LOC_Os07g01920
Os.14676.1.S1_at--654--8691Chr07:557891..557915 (25 bp)
TGTGCTCTGTTTATTCATACTGTCT
LOC_Os07g01920
Os.14676.1.S1_at--503--3571Chr07:557876..557900 (25 bp)
CATACTGTCTGATGGATTGCTGTGT
LOC_Os07g01920
Os.14676.1.S1_at--485--831Chr07:557865..557889 (25 bp)
ATGGATTGCTGTGTATCCCGTCTCA
LOC_Os07g01920
Os.14676.1.S1_at--747--9611Chr07:557843..557867 (25 bp)
TCATCCTCTGCCGAGACATAATTTT
LOC_Os07g01920
Os.14676.1.S1_at--448--10011Chr07:557804..557828 (25 bp)
TAGCTTTACGCTACATTAATATGGT
LOC_Os07g01920
Os.14676.1.S1_at--211--6851Chr07:557781..557805 (25 bp)
GTTTCGCTAGTATTAGTTCGTTACA
LOC_Os07g01920
Os.14676.1.S1_at--434--331Chr07:557744..557768 (25 bp)
ATACTACTCCTGTAATGGTGACTTT
LOC_Os07g01920
Os.14676.1.S1_at--614--3591Chr07:557710..557734 (25 bp)
CTTGAATTCCAGTCCTATTCGTTAT
LOC_Os07g01920
Target Sequence 
AGCTGCTGGTCATCACTGGTTTCAGGAAGNGCAGCATCATTGCAGCATGGTGTGGGAAATTAGGCGAAGGAAGGCCTGAT
TATCCAATCTGCTGGACTTGTTGTGCTCTGTTTATTCATACTGTCTGATGGATTGCTGTGTATCCCGTCTCATCCTCTGC
CGAGACATAATTTTGTTAGCTTATGTTGTAGCTTTACGCTACATTAATATGGTTTCGCTAGTATTAGTTCGTTACATGGT
ACTATGAAATACTACTCCTGTAATGGTGACTTTGTTATTATACTTGAATTCCAGTCCTATTCGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis