Browse Element(s) Details


Os.14686.1.S1_at

Description gb:AK069139.1
DB_XREF= gi:32979163
TID=Os.14686.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008F14, full insert sequence.
FL= gb:AK069139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5012010/11expressed protein
LOC_Os02g545801/11serine esterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g50110Os.16906.1.S1_at10/114+29669014..29672108RNA recognition motif family protein, expressed
LOC_Os04g50120Os.14686.1.S1_at10/114+29675725..29677758expressed protein
LOC_Os04g50130NANA4+29680323..29680751transposon protein, putative, unclassified
LOC_Os04g50140NANA4+29683113..29685630retrotransposon protein, putative, unclassified
LOC_Os04g50150NANA4+29689029..29692350retrotransposon protein, putative, unclassified
LOC_Os04g50160NANA4+29693227..29699382retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14686.1.S1_at--78--1091Chr04:29676191..29676215 (25 bp)
AGGGCAGAAGCAATGCCGCCATGCC
LOC_Os04g50120
Os.14686.1.S1_at--734--692Chr02:33424505..33424899 (25 bp)
ATGAGGAGGCCGGTGCAAATGCAAT
LOC_Os02g54580
Os.14686.1.S1_at--327--7491Chr04:29676005..29676029 (25 bp)
GTGGGACAGTTACTTCATAGTTACA
LOC_Os04g50120
Os.14686.1.S1_at--41--9931Chr04:29675978..29676002 (25 bp)
TACTGTGCTAGTAACAACGGTTTGG
LOC_Os04g50120
Os.14686.1.S1_at--657--6791Chr04:29675953..29675977 (25 bp)
GTTTGGGTTCTCTCTTGTGGAAGAG
LOC_Os04g50120
Os.14686.1.S1_at--466--7851Chr04:29675921..29675945 (25 bp)
GGTAGTAGTTACTCCCTGTCATAAC
LOC_Os04g50120
Os.14686.1.S1_at--288--2011Chr04:29675861..29675885 (25 bp)
ACTCTTTTAGTTACTCTGTGTTTGA
LOC_Os04g50120
Os.14686.1.S1_at--92--9111Chr04:29675776..29675800 (25 bp)
TGCTCCCGGTGTTCATATTCGTGCT
LOC_Os04g50120
Os.14686.1.S1_at--14--6751Chr04:29675766..29675790 (25 bp)
GTTCATATTCGTGCTTGCCTGTAAT
LOC_Os04g50120
Os.14686.1.S1_at--504--8911Chr04:29675736..29675760 (25 bp)
TGAGAATGCTGCTCCTGATGGCCTT
LOC_Os04g50120
Os.14686.1.S1_at--391--6231Chr04:29675720..29675744 (25 bp)
GATGGCCTTCAATGTCAGTCAGTAA
NONE
Target Sequence 
AGGGCAGAAGCAATGCCGCCATGCCGGCCTCGCCCCCGAAACAGTGGTACNCNGTAGCATNACACATATCCATATCTATC
TCTATAGTTATAGCATACATAGCCANGTGAAAAGGAGGAGCTTAGTAATNACAGGATCCCCCATTGCACCCCTGTGCTTC
TGGATGAGGAGGCCGGTGCAAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGG
GTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTA
TAGGTCTTTATTACTCTTTTAGTTACTCTGTGTTTGATATGGTAGATGNACATATATGTATATCACAGATGGTGGGGGGA
ATGGTAGTAGGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGCTCCTGATGGCC
TTCAATGTCAGTCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis