Browse Element(s) Details


Os.52382.1.S1_at

Description gb:AK066752.1
DB_XREF= gi:32976770
TID=Os.52382.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074C24, full insert sequence.
FL= gb:AK066752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5010011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed
LOC_Os04g50070OsAffx.4135.1.S1_at11/114+29644169..29644750Zinc finger, C2H2 type family protein
LOC_Os04g50080OsAffx.14354.1.S1_at11/114+29647415..29648068hypothetical protein
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g50110Os.16906.1.S1_at10/114+29669014..29672108RNA recognition motif family protein, expressed
LOC_Os04g50120Os.14686.1.S1_at10/114+29675725..29677758expressed protein
LOC_Os04g50130NANA4+29680323..29680751transposon protein, putative, unclassified
LOC_Os04g50140NANA4+29683113..29685630retrotransposon protein, putative, unclassified
LOC_Os04g50150NANA4+29689029..29692350retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52382.1.S1_at--880--4511Chr04:29664817..29664841 (25 bp)
GCCGACGTTCTGCAGGAATCCATGG
LOC_Os04g50100
Os.52382.1.S1_at--75--2791Chr04:29664643..29664667 (25 bp)
AAGAGATTGCCCTCCGGTGGGAGAT
LOC_Os04g50100
Os.52382.1.S1_at--423--6431Chr04:29664580..29664604 (25 bp)
GATCATCCAATGTGAGGCGGTCAGT
LOC_Os04g50100
Os.52382.1.S1_at--156--3451Chr04:29664559..29664583 (25 bp)
CAGTTCTCATTTTCTTACTCTAGGA
LOC_Os04g50100
Os.52382.1.S1_at--81--6471Chr04:29664444..29664468 (25 bp)
GATAATGTTGATCTGCTGCCTCACT
LOC_Os04g50100
Os.52382.1.S1_at--328--571Chr04:29664395..29664419 (25 bp)
ATCCTCTGCAGTGCTTGGTTGGTAA
LOC_Os04g50100
Os.52382.1.S1_at--446--10831Chr04:29664381..29664405 (25 bp)
TTGGTTGGTAATGTCTCTTTTGTTC
LOC_Os04g50100
Os.52382.1.S1_at--391--971Chr04:29664346..29664370 (25 bp)
AGGACCTGAGAGCTGATCTCTCTCT
LOC_Os04g50100
Os.52382.1.S1_at--252--3771Chr04:29664319..29664343 (25 bp)
CTCTCTTTTGCTCTGCCATTTTATA
LOC_Os04g50100
Os.52382.1.S1_at--119--10191Chr04:29664298..29664322 (25 bp)
TATACATTACATTGACTTCCCACCG
LOC_Os04g50100
Os.52382.1.S1_at--514--3891Chr04:29664263..29664287 (25 bp)
CTGTGGAGTTTGTTCTTCTGTGAGT
LOC_Os04g50100
Target Sequence 
GCCGACGTTCTGCAGGAATCCATGGAAGACGAGCTGACGGCAGCCAGGGAGAGTGGCCTCCTCGCAGGCGGCGCTGGCAC
GTCAAGACGGTGCCATGGCGAGAACAGCAAGGGAAGGGGAGGCCGCAGCCGACGTGCATTGCAGCTGCAGGACGCCATGG
AGGCTCTGCCGGGGAAGAGATTGCCCTCCGGTGGGAGATCCTGCTTCAGCAGCAAGAGCGGCAGGGGAAAAGATTCAGAT
CATCCAATGTGAGGCGGTCAGTTCTCATTTTCTTACTCTAGGATACTGGACAAGCAACCTTTGTTTGCATGATGAGATGC
GAATGGGAAAAAATTGCAAGGACAATCATCATAATCTGGAGATGTCGTCTTGTGATAATGTTGATCTGCTGCCTCACTCC
ATGTGATGCCACTGCCAAATCGATCCTCTGCAGTGCTTGGTTGGTAATGTCTCTTTTGTTCATAGTTGAGAAGGACCTGA
GAGCTGATCTCTCTCTCTCTCTCTTTTGCTCTGCCATTTTATACATTACATTGACTTCCCACCGTTCAATTTTTCTGTGG
AGTTTGTTCTTCTGTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis