Browse Element(s) Details


OsAffx.14354.1.S1_at

Description tigr:9632.m04865
TID=OsAffx.14354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5008011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50040NANA4+29630755..29631805hypothetical protein
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed
LOC_Os04g50070OsAffx.4135.1.S1_at11/114+29644169..29644750Zinc finger, C2H2 type family protein
LOC_Os04g50080OsAffx.14354.1.S1_at11/114+29647415..29648068hypothetical protein
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g50110Os.16906.1.S1_at10/114+29669014..29672108RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14354.1.S1_at--692--10732Chr04:29647476..29647500 (25 bp)
TTGCAGTACACCTTGTGGATCTCCT
LOC_Os04g50080
OsAffx.14354.1.S1_at--895--1631Chr04:29647593..29647617 (25 bp)
AGCGTGTTGAGGTTCTGGACCATCT
LOC_Os04g50080
OsAffx.14354.1.S1_at--1161--4591Chr04:29647715..29647739 (25 bp)
GCGACGAACACCAACCAAATGATCA
LOC_Os04g50080
OsAffx.14354.1.S1_at--1100--6431Chr04:29647735..29647759 (25 bp)
GATCATGGCAAAGTTCTTGGGCTTC
LOC_Os04g50080
OsAffx.14354.1.S1_at--1004--5771Chr04:29647784..29647808 (25 bp)
GACGACGGCTCCTCCATGGTTGACA
LOC_Os04g50080
OsAffx.14354.1.S1_at--953--3493Chr05:6040452..6040476 (25 bp)
CATGGTTGACATGCTTTTGCGTACA
NONE
OsAffx.14354.1.S1_at--850--10273Chr05:6040467..6040491 (25 bp)
TTTGCGTACATGGTGCGATGCAGAT
NONE
OsAffx.14354.1.S1_at--1084--1931Chr04:29647858..29647882 (25 bp)
ACGGCGTCGGGCTAGCACTGCAAAT
LOC_Os04g50080
OsAffx.14354.1.S1_at--182--10011Chr04:29647870..29647894 (25 bp)
TAGCACTGCAAATCCCGGCGATATG
LOC_Os04g50080
OsAffx.14354.1.S1_at--144--5131Chr04:29647912..29647936 (25 bp)
GCAAATCCTGGCAACTACGCGGCGG
LOC_Os04g50080
OsAffx.14354.1.S1_at--997--891Chr04:29648006..29648030 (25 bp)
AGGCGAAGGGACTCACGGGCTCATT
LOC_Os04g50080
Target Sequence 
TTGCAGTACACCTTGTGGATCTCCTCGCGGTCGTCGCCGGTGTCGGGGCGCCACCGGCGGAGCAGCACGAGGTGGTGGAA
GATCTTGGCGTGCTGGTGCAGGCACATGATGGTGAAGAGCGTGTTGAGGTTCTGGACCATCTGGTCGATCACCTCCGTCC
ACTTCTTCCGCTGCTCGTCGTCGGGATGGTGGAGTCGAGCATGCCGGTCATGAGCATGAACAGCAGCAGCAGCCCGGCGG
CGACGAACACCAACCAAATGATCATGGCAAAGTTCTTGGGCTTCCTGCACCAGCTCACTGGAGGCGCCGACGACGGCTCC
TCCATGGTTGACATGCTTTTGCGTACATGGTGCGATGCAGATGGCGGTGACGGCGGCGTTGAACGGCGTCGGGCTAGCAC
TGCAAATCCCGGCGATATGCTCCTTCGCCGCCGACTGCAAATCCTGGCAACTACGCGGCGGCGGTGCTGGCAGCGTCGAC
GACCACCACCGCCAAGCCGGTGCGGCAAGAGCTACAGGAGTTCGCAAGGGAGGCGAAGGGACTCACGGGCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis