Browse Element(s) Details


Os.7058.1.S1_at

Description gb:AK100784.1
DB_XREF= gi:32985993
TID=Os.7058.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120N07, full insert sequence.
FL= gb:AK100784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5006011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50030OsAffx.26545.1.S1_s_at11/114+29612152..29613524expressed protein
LOC_Os04g50040NANA4+29630755..29631805hypothetical protein
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed
LOC_Os04g50070OsAffx.4135.1.S1_at11/114+29644169..29644750Zinc finger, C2H2 type family protein
LOC_Os04g50080OsAffx.14354.1.S1_at11/114+29647415..29648068hypothetical protein
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7058.1.S1_at--636--10591Chr04:29640639..29640663 (25 bp)
TTCGGCCGGGAAGCTCTTAATGTGG
LOC_Os04g50060
Os.7058.1.S1_at--432--5491Chr04:29640725..29640749 (25 bp)
GAACATCAGGGCAGGCTTCAAGCAG
LOC_Os04g50060
Os.7058.1.S1_at--274--10511Chr04:29640741..29640765 (25 bp)
TTCAAGCAGCTACCACTGAACCAAG
LOC_Os04g50060
Os.7058.1.S1_at--318--9231Chr04:29640801..29640825 (25 bp)
TCCTACCACAGGGATTTCCTAGTTG
LOC_Os04g50060
Os.7058.1.S1_at--33--4731Chr04:29640927..29640951 (25 bp)
GCTGATTTCTTCTGTGGAGGTACCA
LOC_Os04g50060
Os.7058.1.S1_at--850--7831Chr04:29640945..29640969 (25 bp)
GGTACCACTCCATTAGTTATGTCTG
LOC_Os04g50060
Os.7058.1.S1_at--582--6791Chr04:29640960..29640984 (25 bp)
GTTATGTCTGATTCCTATTTCAATG
LOC_Os04g50060
Os.7058.1.S1_at--877--5211Chr04:29640984..29641008 (25 bp)
GAATTTTGACCTATTTCTGGGCAAT
LOC_Os04g50060
Os.7058.1.S1_at--689--6511Chr04:29641013..29641037 (25 bp)
GATATTGGATTTTGACTGGGCTAGA
LOC_Os04g50060
Os.7058.1.S1_at--490--331Chr04:29641072..29641096 (25 bp)
ATACTTCTCTCTAAGCGTGTGTGAC
LOC_Os04g50060
Os.7058.1.S1_at--222--751Chr04:29641144..29641168 (25 bp)
ATGTACTGTTCACATGGTCCAGCCT
LOC_Os04g50060
Target Sequence 
TTCGGCCGGGAAGCTCTTAATGTGGTTGCTTGTGAGGGCACTGAGAGAGTAGAAAGACCAGAGACGTACAAGCAATGGCA
GGTGAGGAACATCAGGGCAGGCTTCAAGCAGCTACCACTGAACCAAGAGACGGTGAAGAAGGCAAGATACAAGGTGAAGA
AATCCTACCACAGGGATTTCCTAGTTGACGAAGATAACAAATGGATGCTGCAAGGTTGGAAGGGGCGTATCATCTTTGCT
CTTTCAGCATGGGANCCAAACTAGNAAACTGTAAATATGACTAACTCAGCTGATTTCTTCTGTGGAGGTACCACTCCATT
AGTTATGTCTGATTCCTATTTCAATGAATTTTGACCTATTTCTGGGCAATAGAAGATATTGGATTTTGACTGGGCTAGAG
TATACTTTGGATGAGTATCTGACAGAAAAGGATATACTTCTCTCTAAGCGTGTGTGACCTGTGGGGCTCAAAACTGTACT
TTGAAAACACAATTACACATCATGCATGTACTGTTCACATGGTCCAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis