Browse Element(s) Details


OsAffx.4135.1.S1_at

Description tigr:9632.m04864
TID=OsAffx.4135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5007011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50040NANA4+29630755..29631805hypothetical protein
LOC_Os04g50050OsAffx.23502.2.S1_at5/114+29632775..29635801hypothetical protein
LOC_Os04g50060Os.7058.1.S1_at11/114+29638486..29641230GRAS family transcription factor containing protein, expressed
LOC_Os04g50070OsAffx.4135.1.S1_at11/114+29644169..29644750Zinc finger, C2H2 type family protein
LOC_Os04g50080OsAffx.14354.1.S1_at11/114+29647415..29648068hypothetical protein
LOC_Os04g50090OsAffx.26546.1.S1_at10/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50090Os.51474.1.S1_at2/114+29658804..29662209Helix-loop-helix DNA-binding domain containing protein
LOC_Os04g50100Os.52382.1.S1_at11/114+29664139..29666053Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g50110Os.16906.1.S1_at10/114+29669014..29672108RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0009934biological_processregulation of meristem organization
GO:0010093biological_processspecification of floral organ identity
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0048441biological_processpetal development
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4135.1.S1_at--421--1771Chr04:29644203..29644227 (25 bp)
ACCTGACGCTTCACCACTTGTTGAA
LOC_Os04g50070
OsAffx.4135.1.S1_at--202--9671Chr04:29644213..29644237 (25 bp)
TCACCACTTGTTGAAGCGGCAGCAC
LOC_Os04g50070
OsAffx.4135.1.S1_at--523--8811Chr04:29644221..29644245 (25 bp)
TGTTGAAGCGGCAGCACCGGCTCAA
LOC_Os04g50070
OsAffx.4135.1.S1_at--530--8991Chr04:29644224..29644248 (25 bp)
TGAAGCGGCAGCACCGGCTCAAGCC
LOC_Os04g50070
OsAffx.4135.1.S1_at--274--4151Chr04:29644371..29644395 (25 bp)
CGCGGTCCTACACGTGCGCGTTCTG
LOC_Os04g50070
OsAffx.4135.1.S1_at--308--4611Chr04:29644541..29644565 (25 bp)
GCGAGGACGGAGTACGCCGTGGCGC
LOC_Os04g50070
OsAffx.4135.1.S1_at--742--311Chr04:29644610..29644634 (25 bp)
ATACCGCACGGAGACGTGCTGCTCT
LOC_Os04g50070
OsAffx.4135.1.S1_at--654--4491Chr04:29644662..29644686 (25 bp)
GCCGTGGCCATGATCACCGGTGCAT
LOC_Os04g50070
OsAffx.4135.1.S1_at--793--8451Chr04:29644666..29644690 (25 bp)
TGGCCATGATCACCGGTGCATCGAT
LOC_Os04g50070
OsAffx.4135.1.S1_at--510--8831Chr04:29644672..29644696 (25 bp)
TGATCACCGGTGCATCGATGTAGGT
LOC_Os04g50070
OsAffx.4135.1.S1_at--325--3531Chr04:29644684..29644708 (25 bp)
CATCGATGTAGGTGACGACGAGAAC
LOC_Os04g50070
Target Sequence 
ACCTGACGCTTCACCACTTGTTGAAGCGGCAGCACCGGCTCAAGCCCGCCGCCGTGGTGTGGAGATGGCCGACGTCGGTG
GTGCCCGGCGGCGGCGCCGGGCGGCCGCCGGTGCCCGACGAGCAGCTGGCGGCGGACGACGTGGACGGCCTGGGCGGGAC
GTGGCCGCCGCGGTCCTACACGTGCGCGTTCTGCCGCCGCGAGTTCCGGTCCGCGCAGGCGCTGGGCGGGCACATGAACG
TGCACCGCCGCGACCGCGCCAAGATGCGCGGCCACGGCCTCCACGGCGCCGCCGGGCAGCAGCTCGGCGCGGCGGAGGCG
CCTGCCGCCGCCGCCGCCGCGAGGACGGAGTACGCCGTGGCGCTGTACCCCATCCTGAACTCCGGCGCGGGCGGCGCGGC
GGTGCGCATACCGCACGGAGACGTGCTGCTCTCCGCGCCCGTCGCGCTGGCGGCCGCGCGCCGTGGCCATGATCACCGGT
GCATCGATGTAGGTGACGACGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis