Browse Element(s) Details


Os.1475.1.S1_at

Description gb:AK060964.1
DB_XREF= gi:32970982
TID=Os.1475.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acid phosphatase (P0710E05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B05, full insert sequence.
FL= gb:AK060964.1 gb:AK109404.2 gb:AK104471.1 gb:AK104183.1 gb:AK061466.1 gb:AK100363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0954011/11plant acid phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09500NANA1+4846703..4848995expressed protein
LOC_Os01g09510Os.37611.1.S1_at11/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09510Os.37611.2.S1_x_at7/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09520NANA1+4853889..4860240transposon protein, putative, unclassified, expressed
LOC_Os01g09530NANA1+4860680..4863917transposon protein, putative, unclassified
LOC_Os01g09540Os.1475.1.S1_at11/111+4868944..4870608plant acid phosphatase family protein, expressed
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09560Os.5825.1.S1_a_at11/111+4888318..4893678Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1475.1.S1_at--1151--9711Chr01:4869802..4869826 (25 bp)
TCAAGATCGTCTTCCTGTCGGACAG
LOC_Os01g09540
Os.1475.1.S1_at--1072--2931Chr01:4869727..4869751 (25 bp)
AAGGCTTCGACTGCTGGGACGAGCT
LOC_Os01g09540
Os.1475.1.S1_at--283--5731Chr01:4869719..4869743 (25 bp)
GACTGCTGGGACGAGCTCATATTAA
LOC_Os01g09540
Os.1475.1.S1_at--422--9731Chr01:4869377..4869399 (23 bp)
TAAGGTCGGAGAACTCGACGGCGAC
LOC_Os01g09540
Os.1475.1.S1_at--973--6111Chr01:4869240..4869264 (25 bp)
GAGGGCCGCCGGACCTTCAAGCTGC
LOC_Os01g09540
Os.1475.1.S1_at--35--9191Chr01:4869208..4869232 (25 bp)
TGCCTACTACATCGACAACTACAAG
LOC_Os01g09540
Os.1475.1.S1_at--1012--5371Chr01:4869119..4869143 (25 bp)
GAAGCAAACGATGCCTAGCTAGCTA
LOC_Os01g09540
Os.1475.1.S1_at--353--1571Chr01:4869103..4869127 (25 bp)
AGCTAGCTATAGTACTCAACTTTGA
LOC_Os01g09540
Os.1475.1.S1_at--473--3071Chr01:4869044..4869068 (25 bp)
AATAATCGGTCGTGTACGTACCTGC
LOC_Os01g09540
Os.1475.1.S1_at--471--7431Chr01:4869033..4869057 (25 bp)
GTGTACGTACCTGCCGTGCTGTGCA
LOC_Os01g09540
Os.1475.1.S1_at--471--9131Chr01:4869017..4869041 (25 bp)
TGCTGTGCACTGTTGTATCTTTTTG
LOC_Os01g09540
Target Sequence 
TCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGC
TTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGA
GAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGC
CGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGC
GCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACT
TTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTG
TATCTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis