Browse Element(s) Details


Os.14896.1.S1_at

Description gb:AK066401.1
DB_XREF= gi:32976419
TID=Os.14896.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063N21, full insert sequence.
FL= gb:AK066401.1 gb:AK061709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2698411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26930NANA2+15811640..15814771retrotransposon protein, putative, unclassified
LOC_Os02g26940Os.52372.1.S1_at11/112+15815665..15820107vegetative storage protein, putative, expressed
LOC_Os02g26950OsAffx.12215.1.S1_at11/112+15822186..15822868hypothetical protein
LOC_Os02g26960OsAffx.12216.1.S1_at11/112+15823380..15827304expressed protein
LOC_Os02g26970OsAffx.2766.1.S1_at11/112+15828555..15829232hypothetical protein
LOC_Os02g26984Os.14896.1.S1_at11/112+15837028..15850339expressed protein
LOC_Os02g26984OsAffx.19099.1.S1_at1/112+15837028..15850339expressed protein
LOC_Os02g27000Os.27422.2.S1_at11/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27000Os.27422.1.S1_at7/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27010NANA2+15873981..15875254retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14896.1.S1_at--111--191Chr02:15849759..15849783 (25 bp)
ATTTCAAGTCTACACCCTGTGCAAT
LOC_Os02g26984
Os.14896.1.S1_at--205--7232Chr02:15849801..15849825 (25 bp)
GTCGACGTGCAGCTAGACTTGACAA
LOC_Os02g26984
Os.14896.1.S1_at--41--1411Chr02:15849815..15849839 (25 bp)
AGACTTGACAACGATTCCTGCTTTC
LOC_Os02g26984
Os.14896.1.S1_at--230--10391Chr02:15849848..15849872 (25 bp)
TTTTCTGCTGCTCTGGTTTCTTCTA
LOC_Os02g26984
Os.14896.1.S1_at--936--10551Chr02:15849865..15849889 (25 bp)
TTCTTCTACGACCAAGGCGGCCAAA
LOC_Os02g26984
Os.14896.1.S1_at--772--5871Chr02:15849999..15850023 (25 bp)
GAGCGCAGTAAGTCCTAGATTCAAA
LOC_Os02g26984
Os.14896.1.S1_at--920--3191Chr02:15850034..15850058 (25 bp)
CAAGGCCGTAAACGACTTGTGCCAA
LOC_Os02g26984
Os.14896.1.S1_at--283--10791Chr02:15850095..15850119 (25 bp)
TTGTTTCCGAAACTGGTGCAAGGTT
LOC_Os02g26984
Os.14896.1.S1_at--512--7331Chr02:15850152..15850176 (25 bp)
GTGCATTGTTGGACTTGTTCTGGAT
LOC_Os02g26984
Os.14896.1.S1_at--610--5731Chr02:15850221..15850245 (25 bp)
GACTGAGCCGCTTACTGTGTAGAGA
LOC_Os02g26984
Os.14896.1.S1_at--181--7651Chr02:15850279..15850303 (25 bp)
GGGAGAACATCCCTACCAATCTTGT
LOC_Os02g26984
Target Sequence 
ATTTCAAGTCTACACCCTGTGCAATGTACTCGTGAAAGAAAAGTCGACGTGCAGCTAGACTTGACAACGATTCCTGCTTT
CTTGGCTGTTTTTCTGCTGCTCTGGTTTCTTCTACGACCAAGGCGGCCAAAGCCCAAGATCAACTAAACCAGCTAATTTT
CAGTGTGGCTGTTGTATGCTAATACCGAGGACGTGAATATTGTGAATATGCACACATGTCATGGGGGACAGCTGCTGCTG
GAGCGCAGTAAGTCCTAGATTCAAAGGGGAAATGACAAGGCCGTAAACGACTTGTGCCAAACNGTGTCACTGTTTAGAGA
AAATAGAACTGAAATTTTGTTTCCGAAACTGGTGCAAGGTTTGAAGTTGCCACATCNTGAGCAGACTTGTGTAGTGCATT
GTTGGACTTGTTCTGGATGGACGTTGATATGAATCTAGTTGAGTAAGCACTGTAGAGNTGTAGACTGAGCCGCTTACTGT
GTAGAGAACTCAATACTGTTTTTGTTTTCCAGAGAACAGCGGGAGAACATCCCTACCAATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis