Browse Element(s) Details


Os.27422.2.S1_at

Description gb:AK069003.1
DB_XREF= gi:32979027
TID=Os.27422.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003D17, full insert sequence.
FL= gb:AK069003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2700011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26984Os.14896.1.S1_at11/112+15837028..15850339expressed protein
LOC_Os02g26984OsAffx.19099.1.S1_at1/112+15837028..15850339expressed protein
LOC_Os02g27000Os.27422.2.S1_at11/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27000Os.27422.1.S1_at7/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27010NANA2+15873981..15875254retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27020OsAffx.27207.1.S1_at10/112+15877457..15878416hypothetical protein
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27422.2.S1_at--10--9851Chr02:15870122..15870143 (22 bp)
TAAAGGAGGCGTCGTCCACCATACA
LOC_Os02g27000
Os.27422.2.S1_at--837--5431Chr02:15870144..15870168 (25 bp)
GAACCTGCTGGATCAGCTGAATGCT
LOC_Os02g27000
Os.27422.2.S1_at--1085--8991Chr02:15870161..15870185 (25 bp)
TGAATGCTGCCAGGAGCTGCCGCAA
LOC_Os02g27000
Os.27422.2.S1_at--954--6431Chr02:15870208..15870232 (25 bp)
GATCAATTACCTCGTTGGTCCATTG
LOC_Os02g27000
Os.27422.2.S1_at--586--7791Chr02:15870224..15870248 (25 bp)
GGTCCATTGTGGCTATCGCCGTAAA
LOC_Os02g27000
Os.27422.2.S1_at--618--9791Chr02:15870275..15870299 (25 bp)
TAAGCTATATATGTCCCAGATGGTT
LOC_Os02g27000
Os.27422.2.S1_at--12--3411Chr02:15870314..15870338 (25 bp)
CAGCTAGCTGTTGGTATGTTTTATG
LOC_Os02g27000
Os.27422.2.S1_at--307--5031Chr02:15870349..15870373 (25 bp)
GCAGTGCTGCATTTTCCAGTGCTAA
LOC_Os02g27000
Os.27422.2.S1_at--1015--1051Chr02:15870380..15870404 (25 bp)
AGGGTGAGTCGACCACCACTCTAAA
LOC_Os02g27000
Os.27422.2.S1_at--393--5851Chr02:15870424..15870448 (25 bp)
GACCATATCGGTTTCAGACCTTCAG
LOC_Os02g27000
Os.27422.2.S1_at--1090--1351Chr02:15870439..15870463 (25 bp)
AGACCTTCAGTATCATTCGATGCAA
LOC_Os02g27000
Target Sequence 
TAAAGGAGGCGTCGTCCACCATACAGAACCTGCTGGATCAGCTGAATGCTGCCAGGAGCTGCCGCAAGAACTAGAAATGG
AATGAAGAAGATCAATTACCTCGTTGGTCCATTGTGGCTATCGCCGTAAAATAAGTTTCCCTTGTACATGTTAGAATAAG
CTATATATGTCCCAGATGGTTAATTGGTGCTAGAACAGCTAGCTGTTGGTATGTTTTATGTGCAAGGTATGCAGTGCTGC
ATTTTCCAGTGCTAACAAAGAAGGGTGAGTCGACCACCACTCTAAACTCGAAAATGTGGGAGATCGACCATATCGGTTTC
AGACCTTCAGTATCATTCGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27422.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis