Browse Element(s) Details


Os.12726.1.S1_at

Description gb:AK119670.1
DB_XREF= gi:37989293
TID=Os.12726.1
CNT=168
FEA=FLmRNA
TIER=FL+Stack
STK=41
UG=Os.12726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H07, full insert sequence.
FL= gb:AK119670.1 gb:AK061947.1 gb:AK071907.1 gb:AK098908.1 gb:AK099269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2703011/11Cysteine proteinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27000Os.27422.2.S1_at11/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27000Os.27422.1.S1_at7/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27010NANA2+15873981..15875254retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27020OsAffx.27207.1.S1_at10/112+15877457..15878416hypothetical protein
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009269biological_processresponse to desiccation
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12726.1.S1_at--1036--7011Chr02:15888788..15888812 (25 bp)
GTACATCTGTGGCAGGCACCTTGAT
LOC_Os02g27030
Os.12726.1.S1_at--921--7531Chr02:15888796..15888820 (25 bp)
GTGGCAGGCACCTTGATCACGGTGT
LOC_Os02g27030
Os.12726.1.S1_at--252--1731Chr02:15888805..15888829 (25 bp)
ACCTTGATCACGGTGTTCTTCTCGT
LOC_Os02g27030
Os.12726.1.S1_at--319--6731Chr02:15888819..15888843 (25 bp)
GTTCTTCTCGTTGGCTACGGCGCAT
LOC_Os02g27030
Os.12726.1.S1_at--457--9931Chr02:15888834..15888858 (25 bp)
TACGGCGCATCTGGTTTTGCTCCAA
LOC_Os02g27030
Os.12726.1.S1_at--757--10391Chr02:15888848..15888872 (25 bp)
TTTTGCTCCAATCCGCCTAAAGGAT
LOC_Os02g27030
Os.12726.1.S1_at--193--2911Chr02:15888867..15888891 (25 bp)
AAGGATAAGGCCTACTGGATCATCA
LOC_Os02g27030
Os.12726.1.S1_at--678--7571Chr02:15888944..15888968 (25 bp)
GGGCTCCAACGTCCGCAACAAATGT
LOC_Os02g27030
Os.12726.1.S1_at--459--3551Chr02:15889125..15889149 (25 bp)
CATCTGCGCTGTTATTGCAGTTATG
LOC_Os02g27030
Os.12726.1.S1_at--840--10191Chr02:15889196..15889220 (25 bp)
TATATGCTTGGTTTGCTACGCAATG
LOC_Os02g27030
Os.12726.1.S1_at--781--3711Chr02:15889211..15889235 (25 bp)
CTACGCAATGCTACACGCTATTTGG
LOC_Os02g27030
Target Sequence 
GTACATCTGTGGCAGGCACCTTGATCACGGTGTTCTTCTCGTTGGCTACGGCGCATCTGGTTTTGCTCCAATCCGCCTAA
AGGATAAGGCCTACTGGATCATCAAGAACTCCTGGGGCGAGAACTGGGGAGAGCATGGGTACTACAAGATCTGCAGGGGC
TCCAACGTCCGCAACAAATGTGGCGTGGATTCNATGGTCTCCACCGTGTCTGCCATCCACACCTCAAAGGAGTAGATTCT
GATCAGTAGTCCCCCGACCATCCTGTGGATGGTNCACAGTTGGTGATTCTGATATTATATATAAGCTAGAACTACGAAAT
ATACTTAGTTTATGCTCCATCTGCGCTGTTATTGCAGTTATGATAAGCAGCGATGATGTGAAGCTGCAACTGAATGTTTG
TCCTAAGTTATATGCTTGGTTTGCTACGCAATGCTACACGCTATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis