Browse Element(s) Details


OsAffx.24443.1.S1_x_at

Description tigr:9630.m02564
TID=OsAffx.24443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2708011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27090NANA2+15915593..15916777transposon protein, putative, Mutator sub-class
LOC_Os02g27100OsAffx.24445.2.S1_at2/112+15920310..15922044hypothetical protein
LOC_Os02g27100Os.53712.1.S1_x_at1/112+15920310..15922044hypothetical protein
LOC_Os02g27110Os.25005.1.A1_at11/112+15925428..15944630expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24443.1.S1_x_at--222--8151Chr02:15914806..15914830 (25 bp)
GGACACTGGAGTGCAAACACCTCAT
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--217--9211Chr02:15914839..15914863 (25 bp)
TCCAATTCATACAGTTCCCCTACAA
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--117--131Chr02:15914843..15914867 (25 bp)
ATTCATACAGTTCCCCTACAAGCAG
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--341--331Chr02:15914847..15914871 (25 bp)
ATACAGTTCCCCTACAAGCAGTGGC
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--758--2131Chr02:15914849..15914873 (25 bp)
ACAGTTCCCCTACAAGCAGTGGCAC
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--304--9911Chr02:15914893..15914917 (25 bp)
TACTCCACTGCCTATCAGGCAAGAT
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--759--9631Chr02:15914907..15914931 (25 bp)
TCAGGCAAGATCAAGCTACTGGAGT
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--307--5171Chr02:15914911..15914935 (25 bp)
GCAAGATCAAGCTACTGGAGTGGAC
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--624--6451Chr02:15914915..15914939 (25 bp)
GATCAAGCTACTGGAGTGGACATTA
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--974--2491Chr02:15914919..15914943 (25 bp)
AAGCTACTGGAGTGGACATTAGGGT
LOC_Os02g27080
OsAffx.24443.1.S1_x_at--816--5671Chr02:15914933..15914957 (25 bp)
GACATTAGGGTGATGCAGCAGCTTA
LOC_Os02g27080
Target Sequence 
GGACACTGGAGTGCAAACACCTCATGCCCCTGCTCCAATTCATACAGTTCCCCTACAAGCAGTGGCACCACCTGGTGGTT
TCCCTACTACTCCACTGCCTATCAGGCAAGATCAAGCTACTGGAGTGGACATTAGGGTGATGCAGCAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24443.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis