Browse Element(s) Details


Os.11765.1.S1_at

Description gb:AK065847.1
DB_XREF= gi:32975865
TID=Os.11765.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042H05, full insert sequence.
FL= gb:AK065847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2706011/11HMG box family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27090NANA2+15915593..15916777transposon protein, putative, Mutator sub-class
LOC_Os02g27100OsAffx.24445.2.S1_at2/112+15920310..15922044hypothetical protein
LOC_Os02g27100Os.53712.1.S1_x_at1/112+15920310..15922044hypothetical protein
LOC_Os02g27110Os.25005.1.A1_at11/112+15925428..15944630expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0045449biological_processregulation of transcription
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11765.1.S1_at--984--1491Chr02:15909138..15909162 (25 bp)
AGCAGTGATGAAACCGCTGATTCGG
LOC_Os02g27060
Os.11765.1.S1_at--631--6071Chr02:15909189..15909213 (25 bp)
GAGTTTAACACAGAGACATCTCCTG
LOC_Os02g27060
Os.11765.1.S1_at--729--5671Chr02:15909203..15909227 (25 bp)
GACATCTCCTGAGCCGAGCATGGAA
LOC_Os02g27060
Os.11765.1.S1_at--252--2471Chr02:15909227..15909251 (25 bp)
AACAACAGATTCTCATGGACAGCCT
LOC_Os02g27060
Os.11765.1.S1_at--994--2531Chr02:15909280..15909304 (25 bp)
AACTGCGCCGCAGGGAGAACCCTAA
LOC_Os02g27060
Os.11765.1.S1_at--236--7371Chr02:15909319..15909343 (25 bp)
GTGACATGCCACCTAATTAACGCTT
LOC_Os02g27060
Os.11765.1.S1_at--874--3131Chr02:15909333..15909357 (25 bp)
AATTAACGCTTGTGCCGAGTTGAAG
LOC_Os02g27060
Os.11765.1.S1_at--716--4632Chr02:15909396..15909420 (25 bp)
GCTGTTTTGTTTCACTTTACCTTTG
LOC_Os02g27060
Os.11765.1.S1_at--954--9971Chr02:15909413..15909437 (25 bp)
TACCTTTGCATCGTCTCTAGAGACT
LOC_Os02g27060
Os.11765.1.S1_at--375--3771Chr02:15909427..15909451 (25 bp)
CTCTAGAGACTGATGCGCTATGCTA
LOC_Os02g27060
Os.11765.1.S1_at--708--7031Chr02:15909606..15909630 (25 bp)
GTACACCAGTTTGTTGCTCACATTA
LOC_Os02g27060
Target Sequence 
AGCAGTGATGAAACCGCTGATTCGGGAGAAAAAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCC
GAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGA
ACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTT
TTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCAT
TGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCA
TCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTT
GTTGCTCACATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis