Browse Element(s) Details


Os.25005.1.A1_at

Description gb:CA764017
DB_XREF= gi:27545824
DB_XREF=AF53-Rpf_01D_L04_T7.ab1
CLONE=C0000268
TID=Os.25005.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25005 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175242.2 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2711011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27090NANA2+15915593..15916777transposon protein, putative, Mutator sub-class
LOC_Os02g27100OsAffx.24445.2.S1_at2/112+15920310..15922044hypothetical protein
LOC_Os02g27100Os.53712.1.S1_x_at1/112+15920310..15922044hypothetical protein
LOC_Os02g27110Os.25005.1.A1_at11/112+15925428..15944630expressed protein
LOC_Os02g27120NANA2+15944956..15946386retrotransposon protein, putative, LINE subclass
LOC_Os02g27130OsAffx.24446.1.S1_at10/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27130OsAffx.4419.1.S1_at1/112+15951144..15971311C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25005.1.A1_at--302--5291Chr02:15926475..15926499 (25 bp)
GAAGGTACCAAGACCATATGCCCCT
LOC_Os02g27110
Os.25005.1.A1_at--1104--831Chr02:15926441..15926465 (25 bp)
AGTGGTCGTACCGTTCAGGACTTAT
LOC_Os02g27110
Os.25005.1.A1_at--743--3011Chr02:15926399..15926423 (25 bp)
AATGCTCTCATCAAAGGATCGACAC
LOC_Os02g27110
Os.25005.1.A1_at--43--9871Chr02:15926370..15926394 (25 bp)
TACACTTGCATGATGATGTCTCAGA
LOC_Os02g27110
Os.25005.1.A1_at--424--6471Chr02:15926310..15926334 (25 bp)
GATACAAGCAATGCCGTGCTACTCT
LOC_Os02g27110
Os.25005.1.A1_at--500--4851Chr02:15926296..15926317 (22 bp)
GCTACTCTTCGACTGCAGAGGTGTT
LOC_Os02g27110
Os.25005.1.A1_at--301--6151Chr02:15925772..15925795 (24 bp)
GAGGTGTTGTCAGGTTCATGCTCAC
LOC_Os02g27110
Os.25005.1.A1_at--38--8271Chr02:15925736..15925760 (25 bp)
GGCAGTCAAGAGAGCCGATTTGTTT
LOC_Os02g27110
Os.25005.1.A1_at--714--10431Chr02:15925656..15925680 (25 bp)
TTAGGCGGACCCAATTCGGTGTTGT
LOC_Os02g27110
Os.25005.1.A1_at--955--10171Chr02:15925541..15925565 (25 bp)
TATAATGCAAGTGGGCGGTCCAATT
LOC_Os02g27110
Os.25005.1.A1_at--201--10251Chr02:15925497..15925521 (25 bp)
TTTCTTTACCCCAAGCAAGGATTTG
LOC_Os02g27110
Target Sequence 
GAAGGTACCAAGACCATATGCCCCTCGCAACANTAGTGGTCGTACCGTTCAGGACTTATCATATGGTTAGATGACAAATG
CTCTCATCAAAGGATCGACACTAGATACACTTGCATGATGATGTCTCAGAAAATTATTTTTGAATTAATATTTGCGCTTG
AGCNTGATACAAGCAATGCCGTGCTACTCTTCGACTGCAGAGGTGTTGTCAGGTTCATGCTCACCTTGACTAGTTGGCAG
TCAAGAGAGCCGATTTGTTTGTATGGATATTTCAGAACGTGAAGGCACATACCAGTGCATTGCATATATAACTTTTTAGG
CGGACCCAATTCGGTGTTGTAAATTTTTGTGTTATATGTGAAATTTTGGGATATAGCAGTNTTAGTCATAATGCAACAAG
AGCTTTATTTGTAGATATATTTTATATATGTATAATGCAAGTGGGCGGTCCAATTTNNANGGCCAGNCAAGGCNCATTTC
TTTACCCCAAGCAAGGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25005.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis