Browse Element(s) Details


OsAffx.24445.2.S1_at

Description tigr:9630.m02567
TID=OsAffx.24445.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g271002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27090NANA2+15915593..15916777transposon protein, putative, Mutator sub-class
LOC_Os02g27100OsAffx.24445.2.S1_at2/112+15920310..15922044hypothetical protein
LOC_Os02g27100Os.53712.1.S1_x_at1/112+15920310..15922044hypothetical protein
LOC_Os02g27110Os.25005.1.A1_at11/112+15925428..15944630expressed protein
LOC_Os02g27120NANA2+15944956..15946386retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24445.2.S1_at--211--2071Chr02:15921000..15921024 (25 bp)
ACTTCCAGTCTTCCACAAGTTGCAA
LOC_Os02g27100
OsAffx.24445.2.S1_at--494--9891Chr02:15921391..15921414 (24 bp)
TACTAGACTCTTACTGAAGCAAGGA
LOC_Os02g27100
OsAffx.24445.2.S1_at--59--5391NONE
GAAGCAAGGAACAAATGCCCTCGTG
NONE
OsAffx.24445.2.S1_at--492--8651Chr02:15922699..15922723 (25 bp)
TGGGCTAACCATGCATCCGTCGAGA
NONE
OsAffx.24445.2.S1_at--608--6051Chr02:15922720..15922744 (25 bp)
GAGATTCATGACTGCCTCTAGAGTT
NONE
OsAffx.24445.2.S1_at--894--10731Chr02:15922625..15923060 (25 bp)
TTGCAAAGCTACACAACTCACGGTC
NONE
OsAffx.24445.2.S1_at--659--4111Chr02:15923063..15923087 (25 bp)
CGCACAAATATCACGGTTACCGCAT
NONE
OsAffx.24445.2.S1_at--883--4951Chr02:15923084..15923108 (25 bp)
GCATCAAACCGTGCGGTAACCGCGA
NONE
OsAffx.24445.2.S1_at--556--7051Chr02:15923099..15923123 (25 bp)
GTAACCGCGACCAAACCATGAAACT
NONE
OsAffx.24445.2.S1_at--761--674Chr05:28528207..28528228 (22 bp)
ATGAAATTCACACGGTTTTCGGCGG
NONE
OsAffx.24445.2.S1_at--831--10251Chr02:15923168..15923192 (25 bp)
TTTCGGCGGTTACCTTGTGCGATAA
NONE
Target Sequence 
ACTTCCAGTCTTCCACAAGTTGCAACTTGCAAGAATAACTGGTTGGCAGTGACCAGTGAGAAGTGGTTAGCTAACGTTGG
TGATATTGATAGTGTTCATAACCAAGCAATGAGGGATTGTGATGCTTTATTGAAAAAAGAGCAGCACATTGATGTTTCTT
TGAACAGCCAAAGTAATGCTGAGAAAATTGCTTATTATACTCGATTAAATGGCTCAATTGATGTTACTAGACTCTTACTG
AAGCAAGGAACAAATGCCCTCGTGGTTGGGCTAACCATGCATCCGTCGAGATTCATGACTGCCTCTAGAGTTGGTGTAAC
GATTGCAAAGCTACACAACTCACGGTCACCGCACAAATATCACGGTTACCGCATCAAACCGTGCGGTAACCGCGACCAAA
CCATGAAACTGCAAAATTTGGAATTCAAGTATTTGCTGATGAAATTCACACGGTTTTCGGCGGTTACCTTGTGCGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24445.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis