Browse Element(s) Details


Os.14915.1.S1_a_at

Description gb:AK070277.1
DB_XREF= gi:32980301
TID=Os.14915.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full insert sequence.
FL= gb:AK060201.1 gb:AK070277.1 gb:AK071697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3791011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37860Os.15365.1.S1_at11/1112+23232491..23239375expressed protein
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed
LOC_Os12g37880Os.18647.1.S1_at6/1112+23246399..23249085expressed protein
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein
LOC_Os12g37939Os.56047.1.S1_at11/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.7824.1.S1_s_at10/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939Os.37965.1.S1_at9/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37939OsAffx.32075.1.S1_at2/1112+23274368..23281948UNC93 homolog A, putative, expressed
LOC_Os12g37960Os.21433.1.S1_at11/1112+23284584..23289908Diaminopimelate epimerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14915.1.S1_a_at--736--7591Chr12:23261868..23261892 (25 bp)
GGGCACAAACCGGACGGCCAGGATT
LOC_Os12g37910
Os.14915.1.S1_a_at--821--5731Chr12:23261856..23261880 (25 bp)
GACGGCCAGGATTTGATCACCCAAT
LOC_Os12g37910
Os.14915.1.S1_a_at--413--10791Chr12:23261844..23261868 (25 bp)
TTGATCACCCAATGGACTCATATTG
LOC_Os12g37910
Os.14915.1.S1_a_at--93--8131Chr12:23261831..23261855 (25 bp)
GGACTCATATTGGTATAAGCATTGT
LOC_Os12g37910
Os.14915.1.S1_a_at--682--651Chr12:23261793..23261817 (25 bp)
ATGAAAATCGCTGGGTTTCCTTTGG
LOC_Os12g37910
Os.14915.1.S1_a_at--147--3171Chr12:23261709..23261733 (25 bp)
AATTGAAGTGTGGTGATACCTCACG
LOC_Os12g37910
Os.14915.1.S1_a_at--446--6491Chr12:23261695..23261719 (25 bp)
GATACCTCACGGTACATCCTAAGGA
LOC_Os12g37910
Os.14915.1.S1_a_at--466--9251Chr12:23261679..23261703 (25 bp)
TCCTAAGGACCACAGATTCTCAGAT
LOC_Os12g37910
Os.14915.1.S1_a_at--109--5251Chr12:23261621..23261645 (25 bp)
GAATAATTCCTCCTATGCTATAGAG
LOC_Os12g37910
Os.14915.1.S1_a_at--452--9251Chr12:23261611..23261635 (25 bp)
TCCTATGCTATAGAGCACTTGTTGT
LOC_Os12g37910
Os.14915.1.S1_a_at--1147--7391Chr12:23261567..23261591 (25 bp)
GTGTCTAGTTGATCACTGCAGGAAG
LOC_Os12g37910
Target Sequence 
GGGCACAAACCGGACGGCCAGGATTTGATCACCCAATGGACTCATATTGGTATAAGCATTGTTCATTGGTAAACAATGAA
AATCGCTGGGTTTCCTTTGGTTTTGGGAGTCAGGAGATGGAGATGTTGAATTGGGGTTGATGATGGTATATATGTGCATA
ATTGAAGTGTGGTGATACCTCACGGTACATCCTAAGGACCACAGATTCTCAGATAAGACATTGTACAAGTTTTTGTGTTT
TTTTCCTGAATAATTCCTCCTATGCTATAGAGCACTTGTTGTCATGCCTGGNAAANTAAGCAGTGTCTAGTTGATCACTG
CAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14915.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis