Browse Element(s) Details


Os.15.1.S1_at

Description gb:AK100950.1
DB_XREF= gi:32986159
TID=Os.15.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15 (NCBI UniGene Cluster)
UG_TITLE=MRNA for shaggy-like kinase etha
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139I22, full insert sequence.
FL= gb:AK105665.1 gb:AK100950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3553011/11Shaggy-related protein kinase eta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35500NANA6+20698118..20698444hypothetical protein
LOC_Os06g35510NANA6+20701536..20702393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35520Os.11546.1.S1_at11/116+20704373..20706000Peroxidase 52 precursor, putative, expressed
LOC_Os06g35524Os.54910.1.S1_at11/116+20711611..20713603expressed protein
LOC_Os06g35530Os.15.1.S1_at11/116+20716775..20723726Shaggy-related protein kinase eta, putative, expressed
LOC_Os06g35540Os.4772.1.S1_at11/116+20726251..20730771Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009933biological_processmeristem organization
GO:0009965biological_processleaf morphogenesis
GO:0016310biological_processphosphorylation
GO:0042538biological_processhyperosmotic salinity response
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15.1.S1_at--300--3151Chr06:20723153..20723177 (25 bp)
AATTCATTGTTTTGCACTGGACCAT
LOC_Os06g35530
Os.15.1.S1_at--151--191Chr06:20723201..20723225 (25 bp)
ATTTACACTTGTCTGCTCATACCTG
LOC_Os06g35530
Os.15.1.S1_at--325--3371Chr06:20723218..20723242 (25 bp)
CATACCTGTGTATGCCAAAGGGCAA
LOC_Os06g35530
Os.15.1.S1_at--210--7611Chr06:20723237..20723261 (25 bp)
GGGCAAATAACATTTCTCACCTTAA
LOC_Os06g35530
Os.15.1.S1_at--677--2291Chr06:20723297..20723321 (25 bp)
AAATGGGCTCCCCTGACAAGGTAGT
LOC_Os06g35530
Os.15.1.S1_at--1087--9131Chr06:20723323..20723347 (25 bp)
TGCGGTGTGCCGTACTACAATCAAA
LOC_Os06g35530
Os.15.1.S1_at--243--6231Chr06:20723362..20723386 (25 bp)
GAGGCCATTGTGTCCAGTGTTCTGC
LOC_Os06g35530
Os.15.1.S1_at--63--7431Chr06:20723378..20723402 (25 bp)
GTGTTCTGCCAAGAGGAGCCCGAAT
LOC_Os06g35530
Os.15.1.S1_at--216--10291Chr06:20723465..20723489 (25 bp)
TTTGCTGTATGTTCCATGCCTGTAC
LOC_Os06g35530
Os.15.1.S1_at--740--571Chr06:20723499..20723523 (25 bp)
ATCCATTCAACCTCATATTCACAAC
LOC_Os06g35530
Os.15.1.S1_at--824--7791Chr06:20723560..20723584 (25 bp)
GGTCGATTCGTATGCCATTATATGC
LOC_Os06g35530
Target Sequence 
AATTCATTGTTTTGCACTGGACCATAGGACGAAGTGTGGTATGACGACATTTACACTTGTCTGCTCATACCTGTGTATGC
CAAAGGGCAAATAACATTTCTCACCTTAAGGTTTTAGAACCTAATCATCTTCTTGCAAAGCTGAAAATGGGCTCCCCTGA
CAAGGTAGTGTGCGGTGTGCCGTACTACAATCAAATGTTAAACCTTGAGGAGGCCATTGTGTCCAGTGTTCTGCCAAGAG
GAGCCCGAATAGCTGGAGGGATGGTGGGTGTATTGTTAAGCTGTGGAGGGTGACTTTTATGTTGAAACTTCCTTTGCTGT
ATGTTCCATGCCTGTACCGCACCTGCATCCATTCAACCTCATATTCACAACTGATGTAATCATGATAAAATTGAATGTGT
CAATGATGGTCGATTCGTATGCCATTATATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis