Browse Element(s) Details


Os.15026.1.S1_at

Description gb:AK062595.1
DB_XREF= gi:32972613
TID=Os.15026.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C01, full insert sequence.
FL= gb:AK062595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3754010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15026.1.S1_at--994--9331NONE
TCGTCCACAAGCTCGAGGAGTACGT
NONE
Os.15026.1.S1_at--203--1391Chr09:21643885..21643909 (25 bp)
AGACGCCCAAGCTGCGTTGGGAGAT
LOC_Os09g37540
Os.15026.1.S1_at--375--1831Chr09:21643957..21643981 (25 bp)
ACGCCCAGCTAGCTATTGCAGATTA
LOC_Os09g37540
Os.15026.1.S1_at--856--4871Chr09:21643968..21643992 (25 bp)
GCTATTGCAGATTAATCTCTCGATC
LOC_Os09g37540
Os.15026.1.S1_at--1117--9891Chr09:21644098..21644122 (25 bp)
TACTCTGTACTCCTCAATTATCTGC
LOC_Os09g37540
Os.15026.1.S1_at--809--3131Chr09:21644113..21644137 (25 bp)
AATTATCTGCCTTTAGCTAGTGTAT
LOC_Os09g37540
Os.15026.1.S1_at--1055--4851Chr09:21644128..21644152 (25 bp)
GCTAGTGTATTATGTACGTGCTCTG
LOC_Os09g37540
Os.15026.1.S1_at--1036--6991Chr09:21644141..21644165 (25 bp)
GTACGTGCTCTGGTTATTGCTTATT
LOC_Os09g37540
Os.15026.1.S1_at--451--10211Chr09:21644155..21644179 (25 bp)
TATTGCTTATTGTTAGCTGGTCTGG
LOC_Os09g37540
Os.15026.1.S1_at--485--7811Chr09:21644173..21644197 (25 bp)
GGTCTGGCTGCATGTACTCTATATA
LOC_Os09g37540
Os.15026.1.S1_at--656--5031Chr09:21644206..21644230 (25 bp)
GCAGTTCTGTACATATACATCGATC
LOC_Os09g37540
Target Sequence 
TCGTCCACAAGCTCGAGGAGTACGTGCCGGTGTAGCAGGAGGGCGACCCGGAGACGCCCAAGCTGCGTTGGGAGATCGAG
CAGCAGGCAGCCGTCCAGGTCGTCGGCTACAGCTCCTCGCTCCACGCCCAGCTAGCTATTGCAGATTAATCTCTCGATCT
GAANTTACTTNAGTAATTAATCTGGTTGACTAAGTAGATCATCAACGAGAGGNTGCANGAGGAGGAACAGGTACNCTAGT
ACNGTACNTTACGAATTCTAAAAAAAAAGGTACTCTGTACTCCTCAATTATCTGCCTTTAGCTAGTGTATTATGTACGTG
CTCTGGTTATTGCTTATTGTTAGCTGGTCTGGCTGCATGTACTCTATATATATATNNGATGCAGTTCTGTACATATACAT
CGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis