Browse Element(s) Details


Os.15135.1.S1_at

Description gb:AK101085.1
DB_XREF= gi:32986294
TID=Os.15135.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative brassinosteroid-insensitive protein BRI1 (P0480C01.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024I12, full insert sequence.
FL= gb:AK073838.1 gb:AK121760.1 gb:AK101085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5205011/11Brassinosteroid LRR receptor kinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed
LOC_Os01g52050Os.15135.1.S1_at11/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52050OsAffx.6027.1.S1_at1/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52060Os.28578.1.S1_at2/111+30264395..30264722expressed protein
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15135.1.S1_at--997--5511Chr01:30254988..30255012 (25 bp)
GAAAATCGCCTGTGCGTGCTTGGAT
LOC_Os01g52050
Os.15135.1.S1_at--108--6371Chr01:30254910..30254934 (25 bp)
GATCCAAGCTGGGTCGACGGTCGAC
LOC_Os01g52050
Os.15135.1.S1_at--779--1151Chr01:30254729..30254753 (25 bp)
AGTCGGCGGCGAAATGCCCGTAGAA
LOC_Os01g52050
Os.15135.1.S1_at--862--6351Chr01:30254680..30254704 (25 bp)
GATGCCATTTTGAACTCTCCACACA
LOC_Os01g52050
Os.15135.1.S1_at--576--3191Chr01:30254648..30254672 (25 bp)
CAATCGCTTCTGATGGTGCTACAAG
LOC_Os01g52050
Os.15135.1.S1_at--767--5211Chr01:30254619..30254643 (25 bp)
GAATTTTCCAGCTGTAGGTTGATCA
LOC_Os01g52050
Os.15135.1.S1_at--125--10071Chr01:30254573..30254597 (25 bp)
TAGGAGTAGATCTTTTCTTCTTTCT
LOC_Os01g52050
Os.15135.1.S1_at--344--10571Chr01:30254552..30254576 (25 bp)
TTCTTTTTTCGCAGCTTTCTTCGTC
LOC_Os01g52050
Os.15135.1.S1_at--612--7231Chr01:30254509..30254533 (25 bp)
GTCGCGTCGCAGTAAGAGCTGTGTA
LOC_Os01g52050
Os.15135.1.S1_at--838--2991Chr01:30254472..30254496 (25 bp)
AATGTTGAATTTTCTTTGGCGCAAA
LOC_Os01g52050
Os.15135.1.S1_at--464--371Chr01:30254447..30254471 (25 bp)
ATCAAAATCCGCCTAGGTTGCTCCT
LOC_Os01g52050
Target Sequence 
GAAAATCGCCTGTGCGTGCTTGGATGACCGGCCGTCGAGGCGGCCGACGATGCTGAAGGTGATGGCAATGTTCAAGGAGA
TCCAAGCTGGGTCGACGGTCGACTCGAAGACCTCGTCGGCGGCAGCGGGNTCGATCGATGAGGGAGGCTATGGGGTCCTT
GACATGCCCCTCAGGGAAGCCAAGGAGGAGAAGGATTAGAAACAACAACCACCGNCACACAGGAGAAACAGCCGGCGGTG
AGTGGCCACCAACGAGGCCAGTCGGCGGCGAAATGCCCGTAGAAACAACAGTCATTCAGAATCAGATGGATGCCATTTTG
AACTCTCCACACAAGCTTAGCAATCGCTTCTGATGGTGCTACAAGATAAGAATTTTCCAGCTGTAGGTTGATCAGTCGAA
GTTGTTATGTACCTATAGGAGTAGATCTTTTCTTCTTTCTTTTTTCGCAGCTTTCTTCGTCTCCCTGTTTGTTTTTCCCG
TCGCGTCGCAGTAAGAGCTGTGTATGTACATATATAAATGTTGAATTTTCTTTGGCGCAAAATCAAAATCCGCCTAGGTT
GCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis