Browse Element(s) Details


Os.28489.1.S1_at

Description gb:AK111476.1
DB_XREF= gi:32996689
TID=Os.28489.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683B11.27 (P0683B11.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A01, full insert sequence.
FL= gb:AK111476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g520308/11AN1-like Zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed
LOC_Os01g52050Os.15135.1.S1_at11/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52050OsAffx.6027.1.S1_at1/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28489.1.S1_at--602--4771Chr01:30231493..30231517 (25 bp)
GCTGCGGCTTCTTCGGCTCTGCCGA
LOC_Os01g52030
Os.28489.1.S1_at--461--2131Chr01:30231396..30231420 (25 bp)
ACAGTCCGCGGAGCACGACCAGGTG
LOC_Os01g52030
Os.28489.1.S1_at--142--9431Chr01:30231133..30231157 (25 bp)
TCGTGAGACCCGACAAGGTGGAGAA
LOC_Os01g52030
Os.28489.1.S1_at--555--7951NONE
GGATAAGCTACAACTGCTCGATCTT
NONE
Os.28489.1.S1_at--765--4791Chr01:30231079..30231103 (25 bp)
GCTCGATCTTGCCAACATTGCCATG
LOC_Os01g52030
Os.28489.1.S1_at--372--10691Chr01:30231062..30231086 (25 bp)
TTGCCATGCCCGAACCAAACGATTG
LOC_Os01g52030
Os.28489.1.S1_at--328--2591Chr01:30231045..30231069 (25 bp)
AACGATTGGTCGATTGCTGATTTGC
LOC_Os01g52030
Os.28489.1.S1_at--1020--9111NONE
TGCTGATTTGCTTCGCGTGCGAGAT
NONE
Os.28489.1.S1_at--966--10271NONE
TTTGCTTCGCGTGCGAGATGGAGTC
NONE
Os.28489.1.S1_at--994--6231Chr01:30231009..30231033 (25 bp)
GATGGAGTCGGTACTCGGTACTGAT
LOC_Os01g52030
Os.28489.1.S1_at--82--7851Chr01:30231000..30231024 (25 bp)
GGTACTCGGTACTGATCTATGTATG
LOC_Os01g52030
Target Sequence 
GCTGCGGCTTCTTCGGCTCTGCCGACACCCGTGGCCTCTGCTCCAAGTGCTACCGCCAGACCGTGATGTCCCAGGCCTCC
GCGCCGTCGGCCGCAGCACAGTCCGCGGAGCACGACCAGGTGGTGTTGCCGGCGCCGGAGGGCGTACCCGTGGACGAGGG
GGCGATGCCGCCGCCGCCGCCGCGGCACGGGGCGAAGACGAAGAGCAGGTGCGCTGCGTGCGGGAGGAGCGTGGGGCTGA
TGGGGTTCGAGTGCCGCTGCGGTGCCGTGTTCTGCGGCGCGCATCGCTACTCGGACAGGCACGACTGCGGCTACGATTAC
AGGGGCGCCGGGCGCGACGCCATCGCCCGCGCCAACCCCGTCGTGAGACCCGACAAGGTGGAGAAGCTCTGAAAAAAAAG
GATAAGCTACAACTGCTCGATCTTGCCAACATTGCCATGCCCGAACCAAACGATTGGTCGATTGCTGATTTGCTTCGCGT
GCGAGATGGAGTCGGTACTCGGTACTGATCTATGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis