Browse Element(s) Details


OsAffx.914.1.S1_x_at

Description gb:NM_191774.1
DB_XREF= gi:34910631
GEN=P0683B11.26
TID=OsAffx.914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0683B11.26 (P0683B11.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g520102/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.914.1.S1_x_at--203--4671Chr01:30229949..30229973 (25 bp)
GCGTGTTCAGGCGACTGGCTGGGTG
NONE
OsAffx.914.1.S1_x_at--454--5371Chr01:30230086..30230110 (25 bp)
GAAGACGTCGACTGCCGCGAGATCG
NONE
OsAffx.914.1.S1_x_at--239--7231Chr01:30230092..30230116 (25 bp)
GTCGACTGCCGCGAGATCGCTGCTG
NONE
OsAffx.914.1.S1_x_at--623--9611Chr01:30230130..30230154 (25 bp)
TCATCTCGCGGTACACGCGGGTGAA
NONE
OsAffx.914.1.S1_x_at--838--9851Chr01:30230141..30230165 (25 bp)
TACACGCGGGTGAACCTCCTCAAGA
NONE
OsAffx.914.1.S1_x_at--737--7711Chr01:30230148..30230172 (25 bp)
GGGTGAACCTCCTCAAGACACAGGA
NONE
OsAffx.914.1.S1_x_at--502--1751Chr01:30230154..30230178 (25 bp)
ACCTCCTCAAGACACAGGACGACTT
NONE
OsAffx.914.1.S1_x_at--173--972Chr01:30230169..30230193 (25 bp)
AGGACGACTTCGACGTGCTCCTGGA
NONE
OsAffx.914.1.S1_x_at--1103--5752Chr01:30230180..30230204 (25 bp)
GACGTGCTCCTGGAGAGGATCACCG
NONE
OsAffx.914.1.S1_x_at--436--6171Chr01:30230194..30230218 (25 bp)
GAGGATCACCGATTTTGTCTACGCC
NONE
OsAffx.914.1.S1_x_at--789--3351Chr01:30230200..30230224 (25 bp)
CACCGATTTTGTCTACGCCGAGAAG
NONE
Target Sequence 
GCGTGTTCAGGCGACTGGCTGGGTGGTGGTGATGCGAGTGGGAGGAAGACGTCGACTGCCGCGAGATCGCTGCTGCTGGC
GGCGGGGATCATCTCGCGGTACACGCGGGTGAACCTCCTCAAGACACAGGACGACTTCGACGTGCTCCTGGAGAGGATCA
CCGATTTTGTCTACGCCGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.914.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis