Browse Element(s) Details


Os.14115.1.S1_at

Description gb:AK072165.1
DB_XREF= gi:32982188
TID=Os.14115.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alliinase (P0683B11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134F14, full insert sequence.
FL= gb:AK072165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5198011/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14115.1.S1_at--827--9251Chr01:30203856..30203880 (25 bp)
TCGCTTACCGGCACTGTTAACGAGG
LOC_Os01g51980
Os.14115.1.S1_at--146--8251Chr01:30203865..30203889 (25 bp)
GGCACTGTTAACGAGGCCGGCACTC
LOC_Os01g51980
Os.14115.1.S1_at--35--8251Chr01:30203883..30203907 (25 bp)
GGCACTCGGTACACGCGGCTGAGCC
LOC_Os01g51980
Os.14115.1.S1_at--755--3391Chr01:30204082..30204106 (25 bp)
CAGCTGCTAGCTGATTGTAGGCAAT
LOC_Os01g51980
Os.14115.1.S1_at--523--8231Chr01:30204115..30204139 (25 bp)
GGCAACGTGGAAAATCAAGACTGGA
LOC_Os01g51980
Os.14115.1.S1_at--723--5731Chr01:30204133..30204157 (25 bp)
GACTGGAATGATCAGCTACGCGTTA
LOC_Os01g51980
Os.14115.1.S1_at--847--4851Chr01:30204147..30204171 (25 bp)
GCTACGCGTTAATCGTTCATTCGTT
LOC_Os01g51980
Os.14115.1.S1_at--382--7191Chr01:30204176..30204200 (25 bp)
GTCGACCTTTCGACGGACAGGTGTA
LOC_Os01g51980
Os.14115.1.S1_at--378--3951Chr01:30204189..30204213 (25 bp)
CGGACAGGTGTAATTATGTGGATCT
LOC_Os01g51980
Os.14115.1.S1_at--415--6771Chr01:30204296..30204320 (25 bp)
GTTACTGATTCAGCACTCGTCATTC
LOC_Os01g51980
Os.14115.1.S1_at--23--9671Chr01:30204305..30204329 (25 bp)
TCAGCACTCGTCATTCTTGGAATCA
LOC_Os01g51980
Target Sequence 
TCGCTTACCGGCACTGTTAACGAGGCCGGCACTCGGTACACGCGGCTGAGCCTCATCAAGACGCAGGACGACTTCGACAT
GCTCCTGGAGAGGATCACCGAATTTGTCGATGCCGAGAAGCACGGCAGAGCTCCCGCTGCCTCCAGCTCCATGTGAAAAT
CGTGAATTGGGACCGGGACNAAAGCTTTCGTCTAGCTGGCTTCGATGGCCACTGTGCCGGAACGATCAGCTGCTAGCTGA
TTGTAGGCAATAAATACAAGGCAACGTGGAAAATCAAGACTGGAATGATCAGCTACGCGTTAATCGTTCATTCGTTCGCT
GTCGACCTTTCGACGGACAGGTGTAATTATGTGGATCTANACAATCAATTAGGTGGACACTATGTGATTATGTTTNCAGT
GACTAATAATTGAGTATGTAAATAAATGAAGATCATACATGTTACTGATTCAGCACTCGTCATTCTTGGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis