Browse Element(s) Details


Os.5347.1.S1_x_at

Description gb:AU174578
DB_XREF= gi:13420488
DB_XREF=AU174578
CLONE=F10060
TID=Os.5347.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5347 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5201010/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5347.1.S1_x_at--96--3211Chr01:30225107..30225131 (25 bp)
CAAGGGGAATGATCAGCTAGACGTT
LOC_Os01g52010
Os.5347.1.S1_x_at--926--4851Chr01:30225122..30225146 (25 bp)
GCTAGACGTTGATTGTTCCCCGTCA
LOC_Os01g52010
Os.5347.1.S1_x_at--736--3711Chr01:30225123..30225147 (25 bp)
CTAGACGTTGATTGTTCCCCGTCAA
LOC_Os01g52010
Os.5347.1.S1_x_at--387--10011Chr01:30225124..30225148 (25 bp)
TAGACGTTGATTGTTCCCCGTCAAT
LOC_Os01g52010
Os.5347.1.S1_x_at--734--1391Chr01:30225125..30225149 (25 bp)
AGACGTTGATTGTTCCCCGTCAATA
LOC_Os01g52010
Os.5347.1.S1_x_at--959--5751Chr01:30225126..30225150 (25 bp)
GACGTTGATTGTTCCCCGTCAATAT
LOC_Os01g52010
Os.5347.1.S1_x_at--580--1891Chr01:30225127..30225151 (25 bp)
ACGTTGATTGTTCCCCGTCAATATT
LOC_Os01g52010
Os.5347.1.S1_x_at--345--4031Chr01:30225128..30225152 (25 bp)
CGTTGATTGTTCCCCGTCAATATTT
LOC_Os01g52010
Os.5347.1.S1_x_at--807--6631Chr01:30225129..30225153 (25 bp)
GTTGATTGTTCCCCGTCAATATTTG
LOC_Os01g52010
Os.5347.1.S1_x_at--686--10751Chr01:30225130..30225154 (25 bp)
TTGATTGTTCCCCGTCAATATTTGG
LOC_Os01g52010
Os.5347.1.S1_x_at--1040--11NONE
ATTGACGAATGATGTAGATATACCC
NONE
Target Sequence 
CAAGGGGAATGATCAGCTAGACGTTGATTGTTCCCCGTCAATATTTGGNCGAACAGGTAGATATTGATTTGTGNGTATTG
ACGAATGATGTAGATATACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5347.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis