Browse Element(s) Details


Os.15215.1.S1_at

Description gb:AK070222.1
DB_XREF= gi:32980246
TID=Os.15215.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041O13, full insert sequence.
FL= gb:AK070222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3128011/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein
LOC_Os09g31300Os.20361.1.A1_at11/119+18813191..18816005Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15215.1.S1_at--1033--10211Chr09:18806354..18806479 (25 bp)
TATTCTGTTACTGGCATTCCTGGAG
LOC_Os09g31280
Os.15215.1.S1_at--1023--5311Chr09:18806483..18806507 (25 bp)
GAAGGTGCTTGTTCCGATCTGTGGC
LOC_Os09g31280
Os.15215.1.S1_at--178--4051Chr09:18806497..18806521 (25 bp)
CGATCTGTGGCTCATGGTGCATGTA
LOC_Os09g31280
Os.15215.1.S1_at--515--1991Chr09:18806573..18806735 (25 bp)
ACTTAAGAGCAATGGTCGCCGATGA
LOC_Os09g31280
Os.15215.1.S1_at--1070--751Chr09:18806889..18806913 (25 bp)
ATGTCTCTCGGATTAGGAAGCCACA
LOC_Os09g31280
Os.15215.1.S1_at--849--10491Chr09:18806939..18806962 (24 bp)
TTAATGGCTTCGCATGTTCTTCGGA
LOC_Os09g31280
Os.15215.1.S1_at--576--9571Chr09:18806956..18807424 (25 bp)
TCTTCGGATGCCAATTACTGTGTAC
LOC_Os09g31280
Os.15215.1.S1_at--392--10851Chr09:18807519..18807543 (25 bp)
TTGGCCATTATGACGCTCTACAGAT
LOC_Os09g31280
Os.15215.1.S1_at--550--4331Chr09:18807639..18807663 (25 bp)
CCAGTACGCTTGCTGTCCAAATGTA
LOC_Os09g31280
Os.15215.1.S1_at--177--711Chr09:18807659..18807683 (25 bp)
ATGTAACCAGAATCTACCCTCAACA
LOC_Os09g31280
Os.15215.1.S1_at--353--2431Chr09:18807689..18807713 (25 bp)
AAAATGCTGCGATGTTCCAAGTTCC
LOC_Os09g31280
Target Sequence 
TATTCTGTTACTGGCATTCCTGGAGATGGAAGGTGCTTGTTCCGATCTGTGGCTCATGGTGCATGTATTAGGTCAGGTAA
GCGACCTGATGATGATCTCCAGAGAAAGATGGCTGATGACTTAAGAGCAATGGTCGCCGATGAATTTATCAAGAGACGGG
CAGAGACTGAATGGTTTGTTGAGGGGGACTTCGATGCATATGTCTCTCGGATTAGGAAGCCACATGTGTGGGGAGGTGAA
CCAGAACTGTTAATGGCTTCGCATGTTCTTCGGATGCCAATTACTGTGTACATGCATGATAAGGAAGCTGGTGGTTTAAT
AGCAATTGCAGAATATGGTCAGGAGTACGGGAAAGAAGATCCAATTCAAGTTCTTTTTCATGGTTTTGGCCATTATGACG
CTCTACAGATACCAGGAAAGGGTGGTCCAAGGTCAAGGCTGTAACATTTGGAGCTCAGATTCCAAACAGTAAGTTTTGAA
CCAACCTTTGTTTCCCTTTCTTTTCCCAGTACGCTTGCTGTCCAAATGTAACCAGAATCTACCCTCAACAAATTTAAAAT
GCTGCGATGTTCCAAGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis