Browse Element(s) Details


Os.15246.1.S1_at

Description gb:AK099509.1
DB_XREF= gi:32984718
TID=Os.15246.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.15246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029E15, full insert sequence.
FL= gb:AK099509.1 gb:AK100835.1 gb:AK061699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1600011/11GAMYB-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein
LOC_Os02g15990NANA2+9075212..9079453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16000Os.15246.1.S1_at11/112+9082748..9087996GAMYB-binding protein, putative, expressed
LOC_Os02g16010Os.46986.1.S1_at2/112+9089342..9095713retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g16020NANA2+9097488..9098827hypothetical protein
LOC_Os02g16030OsAffx.2637.1.S1_at11/112+9106570..9107991Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15246.1.S1_at--728--9831Chr02:9087338..9087362 (25 bp)
TAAAGCGCGAAGAGTGCTCCCGGCT
LOC_Os02g16000
Os.15246.1.S1_at--234--4011Chr02:9087368..9087392 (25 bp)
CGTCAGGTCGGATGTACTCTCAAGC
LOC_Os02g16000
Os.15246.1.S1_at--214--1351Chr02:9087449..9087473 (25 bp)
AGAGTACGTTCTACTGCTTCGGTCT
LOC_Os02g16000
Os.15246.1.S1_at--341--3651Chr02:9087465..9087489 (25 bp)
CTTCGGTCTCTTCTTAGGGATGCAA
LOC_Os02g16000
Os.15246.1.S1_at--565--9591Chr02:9087576..9087600 (25 bp)
TAACTACACGTTCACCGGTGGGAAG
LOC_Os02g16000
Os.15246.1.S1_at--1045--451Chr02:9087617..9087641 (25 bp)
ATCTCTTTGCGATACCATGGTCGAC
LOC_Os02g16000
Os.15246.1.S1_at--1052--3491Chr02:9087632..9087656 (25 bp)
CATGGTCGACGTTCATGGCTGACGA
LOC_Os02g16000
Os.15246.1.S1_at--229--1951Chr02:9087674..9087698 (25 bp)
ACGGCGTGTTGCATCTGAGAGCTGA
LOC_Os02g16000
Os.15246.1.S1_at--603--2611Chr02:9087713..9087737 (25 bp)
AACCCACTGTCTAATGTACTGCTGC
LOC_Os02g16000
Os.15246.1.S1_at--923--2531Chr02:9087740..9087764 (25 bp)
AACTCAAGTTGGCTTTGCGCTCGAG
LOC_Os02g16000
Os.15246.1.S1_at--856--3654Chr08:10023930..10023953 (23 bp)
CTTCTTCTATGCTTAAACCCTTTTG
NONE
Target Sequence 
TAAAGCGCGAAGAGTGCTCCCGGCTCTTCCCGTCAGGTCGGATGTACTCTCAAGCCTTCCATCTTGCAGGGCAGGGCTTC
TTCCTCTCAGCACACTGTAACATGGAACAGCAGAGTACGTTCTACTGCTTCGGTCTCTTCTTAGGGATGCAAGAGAAGGG
CTCAATGAGCGTGACAGTAGATTATGAGTTTGCTGCAAGGACAAGACCGTCAGGAGAGTTTGTGAGCAAGTACAAGGGTA
ACTACACGTTCACCGGTGGGAAGGCGGTTGGTTACAGGAATCTCTTTGCGATACCATGGTCGACGTTCATGGCTGACGAC
AGCCTCTTCTTCCTNGACGGCGTGTTGCATCTGAGAGCTGAATTGACGATAAAGCAACCCACTGTCTAATGTACTGCTGC
CAAACTCAAGTTGGCTTTGCGCTCGAGTGGGTGATAGTGCGAAACATCACATGCTGCAGATATCGTATTGTTTTTTTTCC
CCTTCTTCTATGCTTAAACCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis