Browse Element(s) Details


OsAffx.2637.1.S1_at

Description tigr:9630.m01505
TID=OsAffx.2637.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1603011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16000Os.15246.1.S1_at11/112+9082748..9087996GAMYB-binding protein, putative, expressed
LOC_Os02g16010Os.46986.1.S1_at2/112+9089342..9095713retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g16020NANA2+9097488..9098827hypothetical protein
LOC_Os02g16030OsAffx.2637.1.S1_at11/112+9106570..9107991Harpin-induced protein 1 containing protein, expressed
LOC_Os02g16040Os.7899.1.S1_at11/112+9116018..9119492Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os02g16050Os.14919.1.S1_at5/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050Os.56216.1.S1_at2/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050OsAffx.29313.1.S1_at1/112+9123054..9130846transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2637.1.S1_at--1037--811Chr02:9107366..9107390 (25 bp)
ATGGTGCCCGTGAGGCTGCTGTGCG
LOC_Os02g16030
OsAffx.2637.1.S1_at--238--7571Chr02:9107438..9107462 (25 bp)
GGGCCCATGAGCAAGTGCCAGGTCT
LOC_Os02g16030
OsAffx.2637.1.S1_at--809--691Chr02:9107444..9107468 (25 bp)
ATGAGCAAGTGCCAGGTCTACCTCT
LOC_Os02g16030
OsAffx.2637.1.S1_at--691--1031Chr02:9107457..9107481 (25 bp)
AGGTCTACCTCTTCAGAGTCAGATG
LOC_Os02g16030
OsAffx.2637.1.S1_at--836--9971Chr02:9107462..9107482 (21 bp)
TACCTCTTCAGAGTCAGATGGCAAT
LOC_Os02g16030
OsAffx.2637.1.S1_at--334--3651Chr02:9107467..9107859 (25 bp)
CTTCAGAGTCAGATGGCAATTCCAA
LOC_Os02g16030
OsAffx.2637.1.S1_at--1083--8211Chr02:9107849..9107873 (25 bp)
GGCAATTCCAAAACGCACAAATCTT
LOC_Os02g16030
OsAffx.2637.1.S1_at--1093--2591Chr02:9107860..9107884 (25 bp)
AACGCACAAATCTTTCGAGTTGTTA
LOC_Os02g16030
OsAffx.2637.1.S1_at--1085--10611Chr02:9107873..9107897 (25 bp)
TTCGAGTTGTTATGAAGCCTCAAAG
LOC_Os02g16030
OsAffx.2637.1.S1_at--658--9751Chr02:9107906..9107930 (25 bp)
TAACTGCAAGATTTGGGAGTGACAA
LOC_Os02g16030
OsAffx.2637.1.S1_at--248--191Chr02:9107936..9107960 (25 bp)
ATTTCAAGCAGTTGAACGTCGTGTT
LOC_Os02g16030
Target Sequence 
ATGGTGCCCGTGAGGCTGCTGTGCGACGGCGGCGCCATGGCGCCGCGCGGCGGCGTGTCCGGGAGCGTGGTGGGGCCCAT
GAGCAAGTGCCAGGTCTACCTCTTCAGAGTCAGATGGCAATTCCAAAACGCACAAATCTTTCGAGTTGTTATGAAGCCTC
AAAGAAAAATATTAACTGCAAGATTTGGGAGTGACAAAGTTAATTTCAAGCAGTTGAACGTCGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis