Browse Element(s) Details


Os.15355.1.S1_x_at

Description gb:AK067000.1
DB_XREF= gi:32977018
TID=Os.15355.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.15355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091I12, full insert sequence.
FL= gb:AK104645.1 gb:AK067000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1444011/11Cationic peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14430Os.27793.1.S1_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14430Os.27793.1.S1_x_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14440Os.15355.1.S1_x_at11/112+7948542..7950059Cationic peroxidase 1 precursor, putative, expressed
LOC_Os02g14450OsAffx.24247.1.S1_at10/112+7952133..7953676hypothetical protein
LOC_Os02g14460NANA2+7959781..7960983Peroxidase 52 precursor, putative
LOC_Os02g14470OsAffx.24248.1.S1_at11/112+7964708..7965138hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15355.1.S1_x_at--886--9671Chr02:7949433..7949457 (25 bp)
TCACCATGCTCATCGCGCGGTTCGG
LOC_Os02g14440
Os.15355.1.S1_x_at--83--3911Chr02:7949756..7949780 (25 bp)
CTGGTGAGGCAGTACGCCGCCAACC
LOC_Os02g14440
Os.15355.1.S1_x_at--737--5491Chr02:7949827..7949851 (25 bp)
GAACATCGGGCAGCCCAGCGACGGC
LOC_Os02g14440
Os.15355.1.S1_x_at--77--5751Chr02:7949846..7949870 (25 bp)
GACGGCGAGGTCAGGTGCGACTGCA
LOC_Os02g14440
Os.15355.1.S1_x_at--538--2591Chr02:7949879..7949903 (25 bp)
AACGACAGCTGATCATCCATGGGCT
LOC_Os02g14440
Os.15355.1.S1_x_at--525--10331Chr02:7949912..7949936 (25 bp)
TTTCATGTGGATTTGTGGTGACGTA
LOC_Os02g14440
Os.15355.1.S1_x_at--398--9631Chr02:7949914..7949938 (25 bp)
TCATGTGGATTTGTGGTGACGTATC
LOC_Os02g14440
Os.15355.1.S1_x_at--894--7031Chr02:7949945..7949969 (25 bp)
GTAAATACTGTGATGCAATAAAGCA
LOC_Os02g14440
Os.15355.1.S1_x_at--355--3891Chr02:7949952..7949976 (25 bp)
CTGTGATGCAATAAAGCAGCGTGGT
LOC_Os02g14440
Os.15355.1.S1_x_at--787--3071Chr02:7949961..7949985 (25 bp)
AATAAAGCAGCGTGGTAACATCGTT
LOC_Os02g14440
Os.15355.1.S1_x_at--1028--9831Chr02:7949963..7949987 (25 bp)
TAAAGCAGCGTGGTAACATCGTTGC
LOC_Os02g14440
Target Sequence 
TCACCATGCTCATCGCGCGGTTCGGCAACAAGGGCCTAAGCCCGCGCGACATGACGGCGCTGTCGGGCTCGCACACCGTC
GGCTTCTCGCAGTGCACCAACTTCCGCGCCCACATCTACAACGACGCCAACATCGACCCGTCGTTCGCCGCGCTGCGCCG
CCGCGCGTGCCCCGCCGCGGCACCCAACGGCGACACCAACCTGGCGCCGCTCGACGTGCAGACGCAGAACNNGTTCGACA
ACGCCTACTACGGCAACCTGCTNGTCCGGCGAGGCCTNCTCCACTCCGACCAGGTGCTGTTCAACGGCGGGTCGCAGGAC
GCGCTGGTGAGGCAGTACGCCGCCAACCCGGCGCTGTTCGCCGCCGACTTCGCCAAGGCGATGGTGAAGATGGGGAACAT
CGGGCAGCCCAGCGACGGCGAGGTCAGGTGCGACTGCAGGNTCNTCAACGACAGCTGATCATCCATGGGCTGTANNNNNN
TATATTTTCATGTGGATTTGTGGTGACGTATCNTTGTTGTAAATACTGTGATGCAATAAAGCAGCGTGGTAACATCGTTG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15355.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis