Browse Element(s) Details


OsAffx.24248.1.S1_at

Description tigr:9630.m01345
TID=OsAffx.24248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14430Os.27793.1.S1_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14430Os.27793.1.S1_x_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14440Os.15355.1.S1_x_at11/112+7948542..7950059Cationic peroxidase 1 precursor, putative, expressed
LOC_Os02g14450OsAffx.24247.1.S1_at10/112+7952133..7953676hypothetical protein
LOC_Os02g14460NANA2+7959781..7960983Peroxidase 52 precursor, putative
LOC_Os02g14470OsAffx.24248.1.S1_at11/112+7964708..7965138hypothetical protein
LOC_Os02g14480OsAffx.24249.1.S1_at10/112+7975700..7978621Leucine Rich Repeat family protein, expressed
LOC_Os02g14490OsAffx.2608.1.S1_at11/112+7986052..7988629myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24248.1.S1_at--155--6371Chr02:7965084..7965108 (25 bp)
GATCCAACGGTGACTGGCTCTCAGA
LOC_Os02g14470
OsAffx.24248.1.S1_at--426--8951Chr02:7965074..7965098 (25 bp)
TGACTGGCTCTCAGATCCATCATAG
LOC_Os02g14470
OsAffx.24248.1.S1_at--514--9511Chr02:7965066..7965090 (25 bp)
TCTCAGATCCATCATAGCCGGGAGG
LOC_Os02g14470
OsAffx.24248.1.S1_at--6--1811Chr02:7965039..7965063 (25 bp)
ACCCAAATGCGCGTGGTTGCCGTGG
LOC_Os02g14470
OsAffx.24248.1.S1_at--142--6691Chr02:7965024..7965048 (25 bp)
GTTGCCGTGGGTTCGATGCTTAGCC
LOC_Os02g14470
OsAffx.24248.1.S1_at--419--7491Chr02:7965018..7965042 (25 bp)
GTGGGTTCGATGCTTAGCCTCCCCG
LOC_Os02g14470
OsAffx.24248.1.S1_at--1006--4311Chr02:7964977..7965001 (25 bp)
GCGGAGGTCCCTAGAACTCCCCGTG
LOC_Os02g14470
OsAffx.24248.1.S1_at--1155--9951Chr02:7964967..7964990 (24 bp)
TAGAACTCCCCGTGGCGGTTGAGGA
LOC_Os02g14470
OsAffx.24248.1.S1_at--1155--4491Chr02:7964773..7964797 (25 bp)
GCCGAGTCGTCATTGTCAGCGGCCT
LOC_Os02g14470
OsAffx.24248.1.S1_at--271--9411Chr02:7964767..7964791 (25 bp)
TCGTCATTGTCAGCGGCCTCCGTGA
LOC_Os02g14470
OsAffx.24248.1.S1_at--883--8271Chr02:7964738..7964762 (25 bp)
GGCATGTGCTCGTGGCTTGGCGGAA
LOC_Os02g14470
Target Sequence 
GATCCAACGGTGACTGGCTCTCAGATCCATCATAGCCGGGAGGGGACCCAAATGCGCGTGGTTGCCGTGGGTTCGATGCT
TAGCCTCCCCGCGGCGGTGAGGCGGGAGCGGAGGTCCCTAGAACTCCCCGTGGCGGTTGAGGAGGAGAGTGGGGTGAGAG
GGGAGGCGGCCGAGTCGTCATTGTCAGCGGCCTCCGTGACGGGGGCATGTGCTCGTGGCTTGGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis